Result of FASTA (omim) for
pF1KB3747
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3747, 326 aa
1>>>pF1KB3747 326 - 326 aa - 326 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0568+/-0.000582; mu= 19.8029+/- 0.037
mean_var=207.2422+/-48.798, 0's: 0 Z-trim(111.2): 399 B-trim: 1113 in 1/53
Lambda= 0.089091
statistics sampled from 19156 (19699) to 19156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.606), E-opt: 0.2 (0.231), width: 16
Scan time: 7.360
The best scores are: opt bits E(85289)
NP_001410 (OMIM: 603466) ELAV-like protein 1 [Homo ( 326) 2156 290.5 3.3e-78
XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 1656 226.2 7.6e-59
XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like p ( 346) 1656 226.2 7.6e-59
NP_001164668 (OMIM: 601673) ELAV-like protein 2 is ( 346) 1656 226.2 7.6e-59
NP_001164666 (OMIM: 601673) ELAV-like protein 2 is ( 346) 1656 226.2 7.6e-59
XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 1656 226.3 7.9e-59
XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like p ( 375) 1656 226.3 7.9e-59
XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like p ( 376) 1644 224.8 2.3e-58
NP_001311138 (OMIM: 168360) ELAV-like protein 4 is ( 352) 1642 224.4 2.7e-58
NP_001311144 (OMIM: 168360) ELAV-like protein 4 is ( 358) 1642 224.5 2.7e-58
XP_011539192 (OMIM: 168360) PREDICTED: ELAV-like p ( 389) 1642 224.5 2.8e-58
XP_016856028 (OMIM: 168360) PREDICTED: ELAV-like p ( 359) 1036 146.6 7.5e-35
NP_001311141 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1036 146.6 7.6e-35
NP_001311143 (OMIM: 168360) ELAV-like protein 4 is ( 365) 1036 146.6 7.6e-35
NP_001138246 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1036 146.6 7.6e-35
NP_001138248 (OMIM: 168360) ELAV-like protein 4 is ( 366) 1036 146.6 7.6e-35
NP_001138249 (OMIM: 168360) ELAV-like protein 4 is ( 369) 1036 146.6 7.6e-35
NP_001281277 (OMIM: 168360) ELAV-like protein 4 is ( 371) 1036 146.6 7.6e-35
XP_011539197 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1036 146.6 7.7e-35
XP_016856027 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1036 146.6 7.7e-35
XP_011539196 (OMIM: 168360) PREDICTED: ELAV-like p ( 379) 1036 146.6 7.7e-35
XP_011539195 (OMIM: 168360) PREDICTED: ELAV-like p ( 380) 1036 146.6 7.7e-35
NP_068771 (OMIM: 168360) ELAV-like protein 4 isofo ( 380) 1036 146.6 7.7e-35
NP_001311137 (OMIM: 168360) ELAV-like protein 4 is ( 383) 1036 146.6 7.7e-35
NP_001311142 (OMIM: 168360) ELAV-like protein 4 is ( 385) 1036 146.6 7.8e-35
XP_006710474 (OMIM: 168360) PREDICTED: ELAV-like p ( 393) 1036 146.6 7.8e-35
NP_001138247 (OMIM: 168360) ELAV-like protein 4 is ( 402) 1036 146.7 7.9e-35
XP_011539191 (OMIM: 168360) PREDICTED: ELAV-like p ( 416) 1036 146.7 8e-35
XP_011516088 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_005251452 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_011516087 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_005251450 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_005251451 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_011516086 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_016869907 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_006716799 (OMIM: 601673) PREDICTED: ELAV-like p ( 360) 1024 145.0 2.2e-34
XP_011516085 (OMIM: 601673) PREDICTED: ELAV-like p ( 374) 1024 145.1 2.2e-34
XP_016869901 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1024 145.1 2.3e-34
XP_016869900 (OMIM: 601673) PREDICTED: ELAV-like p ( 388) 1024 145.1 2.3e-34
XP_011516081 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1024 145.1 2.3e-34
XP_006716797 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1024 145.1 2.3e-34
XP_006716798 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1024 145.1 2.3e-34
XP_011516082 (OMIM: 601673) PREDICTED: ELAV-like p ( 389) 1024 145.1 2.3e-34
XP_011516080 (OMIM: 601673) PREDICTED: ELAV-like p ( 392) 1024 145.1 2.3e-34
XP_016869910 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1023 144.9 2.4e-34
XP_016869909 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1023 144.9 2.4e-34
XP_016869912 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1023 144.9 2.4e-34
NP_004423 (OMIM: 601673) ELAV-like protein 2 isofo ( 359) 1023 144.9 2.4e-34
XP_016869911 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1023 144.9 2.4e-34
XP_016869908 (OMIM: 601673) PREDICTED: ELAV-like p ( 359) 1023 144.9 2.4e-34
>>NP_001410 (OMIM: 603466) ELAV-like protein 1 [Homo sap (326 aa)
initn: 2156 init1: 2156 opt: 2156 Z-score: 1525.0 bits: 290.5 E(85289): 3.3e-78
Smith-Waterman score: 2156; 100.0% identity (100.0% similar) in 326 aa overlap (1-326:1-326)
10 20 30 40 50 60
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSEPIT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHMSGLSGVNVPGNA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAM
250 260 270 280 290 300
310 320
pF1KB3 AIASLNGYRLGDKILQVSFKTNKSHK
::::::::::::::::::::::::::
NP_001 AIASLNGYRLGDKILQVSFKTNKSHK
310 320
>>XP_016869913 (OMIM: 601673) PREDICTED: ELAV-like prote (346 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.5 bits: 226.2 E(85289): 7.6e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:38-345)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
XP_016 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
XP_016 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
XP_016 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
XP_016 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
XP_016 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
250 260 270 280 290 300
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
XP_016 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
310 320 330 340
>>XP_016869914 (OMIM: 601673) PREDICTED: ELAV-like prote (346 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.5 bits: 226.2 E(85289): 7.6e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:38-345)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
XP_016 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
XP_016 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
XP_016 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
XP_016 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
XP_016 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
250 260 270 280 290 300
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
XP_016 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
310 320 330 340
>>NP_001164668 (OMIM: 601673) ELAV-like protein 2 isofor (346 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.5 bits: 226.2 E(85289): 7.6e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:38-345)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
NP_001 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
NP_001 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
NP_001 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
NP_001 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
NP_001 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
250 260 270 280 290 300
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
NP_001 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
310 320 330 340
>>NP_001164666 (OMIM: 601673) ELAV-like protein 2 isofor (346 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.5 bits: 226.2 E(85289): 7.6e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:38-345)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
NP_001 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
NP_001 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
NP_001 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
NP_001 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
NP_001 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
250 260 270 280 290 300
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
NP_001 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
310 320 330 340
>>XP_016869905 (OMIM: 601673) PREDICTED: ELAV-like prote (375 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.2 bits: 226.3 E(85289): 7.9e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:67-374)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
XP_016 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
XP_016 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
XP_016 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
XP_016 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
XP_016 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
280 290 300 310 320 330
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
XP_016 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
340 350 360 370
>>XP_011516079 (OMIM: 601673) PREDICTED: ELAV-like prote (375 aa)
initn: 1656 init1: 1656 opt: 1656 Z-score: 1177.2 bits: 226.3 E(85289): 7.9e-59
Smith-Waterman score: 1656; 76.9% identity (94.5% similar) in 308 aa overlap (19-326:67-374)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
XP_011 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
XP_011 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
XP_011 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGVDHM
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .:::::::::: .: :
XP_011 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRFSPMTIDGM
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB3 SGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
..:.:.:.::. ..:::::.:::. ::::.::::::::::::::::::::::::::::::
XP_011 TSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFG
280 290 300 310 320 330
290 300 310 320
pF1KB3 FVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
:::::::.::::::::::::::::..:::::::::.::
XP_011 FVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
340 350 360 370
>>XP_011516078 (OMIM: 601673) PREDICTED: ELAV-like prote (376 aa)
initn: 1642 init1: 1014 opt: 1644 Z-score: 1168.8 bits: 224.8 E(85289): 2.3e-58
Smith-Waterman score: 1644; 76.7% identity (94.2% similar) in 309 aa overlap (19-326:67-375)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVES
.::::::::::::::.::.:::.::::.::
XP_011 GPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIES
40 50 60 70 80 90
50 60 70 80 90 100
pF1KB3 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANL
::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.::::
XP_011 CKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANL
100 110 120 130 140 150
110 120 130 140 150 160
pF1KB3 YISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFN
:.::::.:::::..:..::..::::.::.::::.::.::::.::::::: :::::: ..:
XP_011 YVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLN
160 170 180 190 200 210
170 180 190 200 210 220
pF1KB3 GHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRF-RFSPMGVDH
:.::::..:::::::: ::.:. : :.:::::.:: ::. ::. .::::: ::::: .:
XP_011 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFSRFSPMTIDG
220 230 240 250 260 270
230 240 250 260 270 280
pF1KB3 MSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGF
:..:.:.:.::. ..:::::.:::. ::::.:::::::::::::::::::::::::::::
XP_011 MTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGF
280 290 300 310 320 330
290 300 310 320
pF1KB3 GFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
::::::::.::::::::::::::::..:::::::::.::
XP_011 GFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
340 350 360 370
>>NP_001311138 (OMIM: 168360) ELAV-like protein 4 isofor (352 aa)
initn: 1642 init1: 1642 opt: 1642 Z-score: 1167.7 bits: 224.4 E(85289): 2.7e-58
Smith-Waterman score: 1642; 75.2% identity (94.5% similar) in 311 aa overlap (16-326:41-351)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGE
: ..::::::::::::::.:.::::.::::
NP_001 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKD
.:: ::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.:
NP_001 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB3 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT
::::.::::.:::::..:..::..::::.::.::::.::.::::.::::::: ::::::
NP_001 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB3 SFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGV
..::.:: :..:::::::: ::.:... :::::::.:: ::. ::.:::::::::::. .
NP_001 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPITI
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB3 DHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK
: :..: :.:.::....:::::.:::. :.::..:::.:::::::.::::::::::::::
NP_001 DGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK
260 270 280 290 300 310
290 300 310 320
pF1KB3 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
::::::::::.::::::::::::::::..:::::::::.::
NP_001 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
320 330 340 350
>>NP_001311144 (OMIM: 168360) ELAV-like protein 4 isofor (358 aa)
initn: 1642 init1: 1642 opt: 1642 Z-score: 1167.6 bits: 224.5 E(85289): 2.7e-58
Smith-Waterman score: 1642; 75.2% identity (94.5% similar) in 311 aa overlap (16-326:47-357)
10 20 30 40
pF1KB3 MSNGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGE
: ..::::::::::::::.:.::::.::::
NP_001 VSNGPTSNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGE
20 30 40 50 60 70
50 60 70 80 90 100
pF1KB3 VESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKD
.:: ::.:::..:.:::::::::. ::::.:::::::::::.:::::::::::: :.:
NP_001 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD
80 90 100 110 120 130
110 120 130 140 150 160
pF1KB3 ANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAIT
::::.::::.:::::..:..::..::::.::.::::.::.::::.::::::: ::::::
NP_001 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK
140 150 160 170 180 190
170 180 190 200 210 220
pF1KB3 SFNGHKPPGSSEPITVKFAANPNQNKNVALLSQLYHSPARRFGGPVHHQAQRFRFSPMGV
..::.:: :..:::::::: ::.:... :::::::.:: ::. ::.:::::::::::. .
NP_001 GLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHHQAQRFRFSPITI
200 210 220 230 240 250
230 240 250 260 270 280
pF1KB3 DHMSGLSGVNVPGNASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK
: :..: :.:.::....:::::.:::. :.::..:::.:::::::.::::::::::::::
NP_001 DGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCK
260 270 280 290 300 310
290 300 310 320
pF1KB3 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNKSHK
::::::::::.::::::::::::::::..:::::::::.::
NP_001 GFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAHKS
320 330 340 350
326 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:38:48 2016 done: Fri Nov 4 02:38:49 2016
Total Scan time: 7.360 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]