FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3711, 75 aa
  1>>>pF1KB3711 75 - 75 aa - 75 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8183+/-0.000529; mu= 9.2803+/- 0.032
 mean_var=47.1681+/- 9.293, 0's: 0 Z-trim(111.6): 19  B-trim: 0 in 0/54
 Lambda= 0.186745
 statistics sampled from 12524 (12543) to 12524 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.385), width:  16
 Scan time:  1.390

The best scores are:                                      opt bits E(32554)
CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1            (  75)  489 138.3 4.3e-34
CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14         (  71)  381 109.2 2.3e-25
CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11           (  75)  341 98.4 4.3e-22
CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19         (  70)  321 93.0 1.7e-20
CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19          (  68)  283 82.8   2e-17
CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1         (  72)  280 82.0 3.7e-17
CCDS696.1 GNG5 gene_id:2787|Hs108|chr1             (  68)  211 63.4 1.4e-11
CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9          (  68)  204 61.5 5.1e-11


>>CCDS1607.1 GNG4 gene_id:2786|Hs108|chr1                 (75 aa)
 initn: 489 init1: 489 opt: 489  Z-score: 725.6  bits: 138.3 E(32554): 4.3e-34
Smith-Waterman score: 489; 100.0% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::::::::::::
CCDS16 SENPFREKKFFCTIL
               70     

>>CCDS32082.1 GNG2 gene_id:54331|Hs108|chr14              (71 aa)
 initn: 381 init1: 381 opt: 381  Z-score: 568.8  bits: 109.2 E(32554): 2.3e-25
Smith-Waterman score: 381; 77.5% identity (95.8% similar) in 71 aa overlap (5-75:1-71)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           :..:.:.::.:::: :::::::: .::.:::.:::::.::::::..::::. ::::
CCDS32     MASNNTASIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPA
                   10        20        30        40        50      

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::.::
CCDS32 SENPFREKKFFCAIL
         60        70 

>>CCDS8032.1 GNG3 gene_id:2785|Hs108|chr11                (75 aa)
 initn: 351 init1: 341 opt: 341  Z-score: 510.1  bits: 98.4 E(32554): 4.3e-22
Smith-Waterman score: 341; 69.3% identity (85.3% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
       ::     ::: ::.:::: :::::.:: . :.:::.:::::..::.::. ::::: :::.
CCDS80 MKGETPVNSTMSIGQARKMVEQLKIEASLCRIKVSKAAADLMTYCDAHACEDPLITPVPT
               10        20        30        40        50        60

               70     
pF1KB3 SENPFREKKFFCTIL
       ::::::::::::..:
CCDS80 SENPFREKKFFCALL
               70     

>>CCDS12687.1 GNG8 gene_id:94235|Hs108|chr19              (70 aa)
 initn: 326 init1: 300 opt: 321  Z-score: 481.5  bits: 93.0 E(32554): 1.7e-20
Smith-Waterman score: 321; 63.4% identity (94.4% similar) in 71 aa overlap (5-75:1-70)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
           ::::  ..:..:::.:::::.:. .::.:::::::.:::.::.:...:::. ::::
CCDS12     MSNN-MAKIAEARKTVEQLKLEVNIDRMKVSQAAAELLAFCETHAKDDPLVTPVPA
                    10        20        30        40        50     

               70     
pF1KB3 SENPFREKKFFCTIL
       .:::::.:..::..:
CCDS12 AENPFRDKRLFCVLL
          60        70

>>CCDS12091.1 GNG7 gene_id:2788|Hs108|chr19               (68 aa)
 initn: 277 init1: 277 opt: 283  Z-score: 426.4  bits: 82.8 E(32554): 2e-17
Smith-Waterman score: 283; 60.3% identity (89.7% similar) in 68 aa overlap (8-75:2-68)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
              ..:..:.:::: ::::..:: ..:.:::.::.::..::: :.:.:::.. :::
CCDS12       MSATNNIAQARKLVEQLRIEAGIERIKVSKAASDLMSYCEQHARNDPLLVGVPA
                     10        20        30        40        50    

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::..::  : ::
CCDS12 SENPFKDKKP-CIIL
           60         

>>CCDS30749.1 GNG12 gene_id:55970|Hs108|chr1              (72 aa)
 initn: 272 init1: 272 opt: 280  Z-score: 421.6  bits: 82.0 E(32554): 3.7e-17
Smith-Waterman score: 280; 58.2% identity (89.6% similar) in 67 aa overlap (9-75:7-72)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
               ::..:.:::..:.::..:: ..:.:::.:.:::..::: :.: :::.: .:.
CCDS30   MSSKTASTNNIAQARRTVQQLRLEASIERIKVSKASADLMSYCEEHARSDPLLIGIPT
                 10        20        30        40        50        

               70     
pF1KB3 SENPFREKKFFCTIL
       :::::..::  : ::
CCDS30 SENPFKDKKT-CIIL
       60         70  

>>CCDS696.1 GNG5 gene_id:2787|Hs108|chr1                  (68 aa)
 initn: 189 init1: 175 opt: 211  Z-score: 321.5  bits: 63.4 E(32554): 1.4e-11
Smith-Waterman score: 211; 45.6% identity (79.4% similar) in 68 aa overlap (8-75:2-68)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
              ....:..  .:.:.::..:: ..:::::::::::  .:  ....:::.  : .
CCDS69       MSGSSSVAAMKKVVQQLRLEAGLNRVKVSQAAADLKQFCLQNAQHDPLLTGVSS
                     10        20        30        40        50    

               70     
pF1KB3 SENPFREKKFFCTIL
       : :::: .:  :..:
CCDS69 STNPFRPQKV-CSFL
           60         

>>CCDS35107.1 GNG10 gene_id:2790|Hs108|chr9               (68 aa)
 initn: 230 init1: 187 opt: 204  Z-score: 311.4  bits: 61.5 E(32554): 5.1e-11
Smith-Waterman score: 204; 48.5% identity (75.0% similar) in 68 aa overlap (8-75:2-68)

               10        20        30        40        50        60
pF1KB3 MKEGMSNNSTTSISQARKAVEQLKMEACMDRVKVSQAAADLLAYCEAHVREDPLIIPVPA
              .: .: :  .. :::::.:: ..:.:::::::.:  ::  .. .: :.. :::
CCDS35       MSSGASASALQRLVEQLKLEAGVERIKVSQAAAELQQYCMQNACKDALLVGVPA
                     10        20        30        40        50    

               70     
pF1KB3 SENPFREKKFFCTIL
       . ::::: .  :..:
CCDS35 GSNPFREPRS-CALL
           60         




75 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:38:07 2016 done: Fri Nov  4 02:38:07 2016
 Total Scan time:  1.390 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]