Result of FASTA (ccds) for
pF1KB3668
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3668, 261 aa
1>>>pF1KB3668 261 - 261 aa - 261 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3200+/-0.00113; mu= 1.5192+/- 0.067
mean_var=212.1212+/-46.012, 0's: 0 Z-trim(109.9): 35 B-trim: 437 in 1/49
Lambda= 0.088061
statistics sampled from 11180 (11201) to 11180 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.701), E-opt: 0.2 (0.344), width: 16
Scan time: 2.160
The best scores are: opt bits E(32554)
CCDS3567.1 RCHY1 gene_id:25898|Hs108|chr4 ( 261) 1932 257.8 5.5e-69
CCDS63992.1 RCHY1 gene_id:25898|Hs108|chr4 ( 239) 1720 230.8 6.6e-61
CCDS63991.1 RCHY1 gene_id:25898|Hs108|chr4 ( 221) 1410 191.4 4.5e-49
CCDS34012.1 RCHY1 gene_id:25898|Hs108|chr4 ( 252) 1285 175.6 3e-44
CCDS63990.1 RCHY1 gene_id:25898|Hs108|chr4 ( 212) 763 109.2 2.4e-24
>>CCDS3567.1 RCHY1 gene_id:25898|Hs108|chr4 (261 aa)
initn: 1932 init1: 1932 opt: 1932 Z-score: 1352.0 bits: 257.8 E(32554): 5.5e-69
Smith-Waterman score: 1932; 99.6% identity (100.0% similar) in 261 aa overlap (1-261:1-261)
10 20 30 40 50 60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS35 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
190 200 210 220 230 240
250 260
pF1KB3 KICESYNTAQAGGRRISLDQQ
:::::::::::::::::::::
CCDS35 KICESYNTAQAGGRRISLDQQ
250 260
>>CCDS63992.1 RCHY1 gene_id:25898|Hs108|chr4 (239 aa)
initn: 1720 init1: 1720 opt: 1720 Z-score: 1207.0 bits: 230.8 E(32554): 6.6e-61
Smith-Waterman score: 1720; 99.1% identity (100.0% similar) in 232 aa overlap (30-261:8-239)
10 20 30 40 50 60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
.::::::::::::::::::::::::::::::
CCDS63 MAPAVKSEAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
10 20 30
70 80 90 100 110 120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
160 170 180 190 200 210
250 260
pF1KB3 KICESYNTAQAGGRRISLDQQ
:::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
220 230
>>CCDS63991.1 RCHY1 gene_id:25898|Hs108|chr4 (221 aa)
initn: 1410 init1: 1410 opt: 1410 Z-score: 994.6 bits: 191.4 E(32554): 4.5e-49
Smith-Waterman score: 1533; 84.3% identity (84.7% similar) in 261 aa overlap (1-261:1-221)
10 20 30 40 50 60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
:::::::::::::::::::::::::::::::
CCDS63 MAATAREDGASGQERGQRGCEHYDRGCLLKA-----------------------------
10 20 30
70 80 90 100 110 120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 -----------QQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
40 50 60 70 80
130 140 150 160 170 180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
150 160 170 180 190 200
250 260
pF1KB3 KICESYNTAQAGGRRISLDQQ
:::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
210 220
>>CCDS34012.1 RCHY1 gene_id:25898|Hs108|chr4 (252 aa)
initn: 1285 init1: 1285 opt: 1285 Z-score: 908.0 bits: 175.6 E(32554): 3e-44
Smith-Waterman score: 1842; 96.2% identity (96.6% similar) in 261 aa overlap (1-261:1-252)
10 20 30 40 50 60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
:::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS34 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------G
130 140 150 160 170
190 200 210 220 230 240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS34 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
180 190 200 210 220 230
250 260
pF1KB3 KICESYNTAQAGGRRISLDQQ
:::::::::::::::::::::
CCDS34 KICESYNTAQAGGRRISLDQQ
240 250
>>CCDS63990.1 RCHY1 gene_id:25898|Hs108|chr4 (212 aa)
initn: 849 init1: 763 opt: 763 Z-score: 550.6 bits: 109.2 E(32554): 2.4e-24
Smith-Waterman score: 1443; 80.8% identity (81.2% similar) in 261 aa overlap (1-261:1-212)
10 20 30 40 50 60
pF1KB3 MAATAREDGASGQERGQRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEV
:::::::::::::::::::::::::::::::
CCDS63 MAATAREDGASGQERGQRGCEHYDRGCLLKA-----------------------------
10 20 30
70 80 90 100 110 120
pF1KB3 QCINCEKIQHAQQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 -----------QQTCEECSTLFGEYYCDICHLFDKDKKQYHCENCGICRIGPKEDFFHCL
40 50 60 70 80
130 140 150 160 170 180
pF1KB3 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG
:::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS63 KCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHR---------G
90 100 110 120 130
190 200 210 220 230 240
pF1KB3 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDFLCNDCNGRSTVQFHILGMKC
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS63 YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKC
140 150 160 170 180 190
250 260
pF1KB3 KICESYNTAQAGGRRISLDQQ
:::::::::::::::::::::
CCDS63 KICESYNTAQAGGRRISLDQQ
200 210
261 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:58:04 2016 done: Fri Nov 4 20:58:05 2016
Total Scan time: 2.160 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]