FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3507, 373 aa
  1>>>pF1KB3507 373 - 373 aa - 373 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5027+/-0.000814; mu= 15.8450+/- 0.049
 mean_var=69.9729+/-14.010, 0's: 0 Z-trim(107.1): 10  B-trim: 67 in 1/53
 Lambda= 0.153324
 statistics sampled from 9384 (9386) to 9384 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.288), width:  16
 Scan time:  1.950

The best scores are:                                      opt bits E(32554)
CCDS1344.1 GLUL gene_id:2752|Hs108|chr1            ( 373) 2630 590.8 6.6e-169


>>CCDS1344.1 GLUL gene_id:2752|Hs108|chr1                 (373 aa)
 initn: 2630 init1: 2630 opt: 2630  Z-score: 3145.9  bits: 590.8 E(32554): 6.6e-169
Smith-Waterman score: 2630; 100.0% identity (100.0% similar) in 373 aa overlap (1-373:1-373)

               10        20        30        40        50        60
pF1KB3 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTTSASSHLNKGIKQVYMSLPQGEKVQAMYIWIDGTGEGLRCKTRTLDSEPKCVEELPEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NFDGSSTLQSEGSNSDMYLVPAAMFRDPFRKDPNKLVLCEVFKYNRRPAETNLRHTCKRI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MDMVSNQHPWFGMEQEYTLMGTDGHPFGWPSNGFPGPQGPYYCGVGADRAYGRDIVEAHY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RACLYAGVKIAGTNAEVMPAQWEFQIGPCEGISMGDHLWVARFILHRVCEDFGVIATFDP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB3 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KPIPGNWNGAGCHTNFSTKAMREENGLKYIEEAIEKLSKRHQYHIRAYDPKGGLDNARRL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB3 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TGFHETSNINDFSAGVANRSASIRIPRTVGQEKKGYFEDRRPSANCDPFSVTEALIRTCL
              310       320       330       340       350       360

              370   
pF1KB3 LNETGDEPFQYKN
       :::::::::::::
CCDS13 LNETGDEPFQYKN
              370   




373 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:10:22 2016 done: Sat Nov  5 12:10:22 2016
 Total Scan time:  1.950 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]