Result of FASTA (ccds) for
pF1KB3490
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3490, 337 aa
1>>>pF1KB3490 337 - 337 aa - 337 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0397+/-0.000956; mu= 11.7169+/- 0.057
mean_var=70.6258+/-14.170, 0's: 0 Z-trim(104.7): 50 B-trim: 14 in 1/50
Lambda= 0.152613
statistics sampled from 8025 (8060) to 8025 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.623), E-opt: 0.2 (0.248), width: 16
Scan time: 2.530
The best scores are: opt bits E(32554)
CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12 ( 340) 2147 482.0 2.9e-136
CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12 ( 319) 2001 449.9 1.3e-126
CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3 ( 363) 741 172.5 4.8e-43
CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7 ( 354) 735 171.2 1.2e-42
CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7 ( 251) 493 117.8 9.3e-27
CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7 ( 320) 396 96.5 3.1e-20
>>CCDS9185.1 RFC5 gene_id:5985|Hs108|chr12 (340 aa)
initn: 1737 init1: 1737 opt: 2147 Z-score: 2559.8 bits: 482.0 E(32554): 2.9e-136
Smith-Waterman score: 2147; 98.8% identity (99.1% similar) in 340 aa overlap (1-337:1-340)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS91 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
CCDS91 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
250 260 270 280 290 300
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
CCDS91 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
310 320 330 340
>>CCDS41843.2 RFC5 gene_id:5985|Hs108|chr12 (319 aa)
initn: 1591 init1: 1591 opt: 2001 Z-score: 2386.5 bits: 449.9 E(32554): 1.3e-126
Smith-Waterman score: 2001; 98.7% identity (99.1% similar) in 318 aa overlap (23-337:2-319)
10 20 30 40 50 60
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
::::::::::::::::::::::::::::::::::::::
CCDS41 MVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYG
10 20 30
70 80 90 100 110 120
pF1KB3 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKGFK
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB3 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB3 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 LMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTG
160 170 180 190 200 210
250 260 270 280 290
pF1KB3 HPLKSDIANILDWMLNQDFTTAYR---KLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
:::::::::::::::::::::::: .::::::::::::::::::::::::::::::::
CCDS41 HPLKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH
220 230 240 250 260 270
300 310 320 330
pF1KB3 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
::::::::::::::::::::::::::::::::::::::::
CCDS41 LLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
280 290 300 310
>>CCDS3283.1 RFC4 gene_id:5984|Hs108|chr3 (363 aa)
initn: 714 init1: 388 opt: 741 Z-score: 886.3 bits: 172.5 E(32554): 4.8e-43
Smith-Waterman score: 741; 40.0% identity (70.9% similar) in 320 aa overlap (16-324:34-353)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTIQ
: . .::::::::. .... .........
CCDS32 FLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 KFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPI
: .. ::.::.:::::::::::::: :..:. . : ::::::::.:::...: .
CCDS32 KSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKV
70 80 90 100 110 120
110 120 130 140 150
pF1KB3 LSFAS-----TRTIFKK--GFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYL
.::. .:. : ::.:::::::.::. :: ::::..:: ...:::::::::.
CCDS32 KNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYV
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 SKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALN
:.:: : :::..::: ::. ... :: ....:.: ::..:. :: .: ::.:.:..
CCDS32 SRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAIT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 ILQS-TNMAFGK-VTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTL--KGLAL
.::: : .. :: .::... .: : ... . .: .: : .: :
CCDS32 FLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAA
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 HDILTEIHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIV
......: : . .. .. . . :.:... :. :..:..:: :: :
CCDS32 TQLVNQLHDVVVENNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQQLSQNC
310 320 330 340 350 360
pF1KB3 AEA
>>CCDS5568.1 RFC2 gene_id:5982|Hs108|chr7 (354 aa)
initn: 673 init1: 573 opt: 735 Z-score: 879.4 bits: 171.2 E(32554): 1.2e-42
Smith-Waterman score: 735; 37.0% identity (70.3% similar) in 316 aa overlap (12-324:28-342)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
:... .::::::::: ::......: .: .
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
. : : .:.... ::::::::..:: :. : . . .::::::.:::::..:.
CCDS55 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALL-GPALKDAMLELNASNDRGIDVVRNK
70 80 90 100 110
110 120 130 140 150 160
pF1KB3 ILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIP
: ::. .. . :: :..::::::.::. ::.::::..: ....::: : :: .:::
CCDS55 IKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIE
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 ALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQST
.::::. .:. :: .. :: .:.:.:.: ..::..:.. ..::::.::: ::::
CCDS55 PIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQST
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 NMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTLK--GLALHDILTEI
.:: .. :.:. .: . .... .: .. ::. : : : . .::. .:
CCDS55 FSGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNI
240 250 260 270 280 290
290 300 310 320 330
pF1KB3 HLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
. .. ...... ... ..... :.: .:...:.:
CCDS55 FRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
300 310 320 330 340 350
>>CCDS75618.1 RFC2 gene_id:5982|Hs108|chr7 (251 aa)
initn: 441 init1: 384 opt: 493 Z-score: 593.9 bits: 117.8 E(32554): 9.3e-27
Smith-Waterman score: 493; 34.9% identity (69.4% similar) in 235 aa overlap (93-324:5-239)
70 80 90 100 110 120
pF1KB3 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFASTRTIFKKG-FKL
:. ::::..:. : ::. .. . :: :.
CCDS75 MCPTSSLRGIDVVRNKIKMFAQQKVTLPKGRHKI
10 20 30
130 140 150 160 170 180
pF1KB3 VILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPEL
.::::::.::. ::.::::..: ....::: : :: .::: .::::. .:. ::
CCDS75 IILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQ
40 50 60 70 80 90
190 200 210 220 230 240
pF1KB3 MVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGH
.. :: .:.:.:.: ..::..:.. ..::::.::: :::: .:: .. :.:. .
CCDS75 ILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDE
100 110 120 130 140 150
250 260 270 280 290
pF1KB3 PLKSDIANILDWMLNQDFTTAYRKLKTLK--GLALHDILTEIHLFVHRVDFPSSVRIHLL
: . .... .: .. ::. : : : . .::. .: . .. ......
CCDS75 PHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFI
160 170 180 190 200 210
300 310 320 330
pF1KB3 TKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
... ..... :.: .:...:.:
CCDS75 KEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
220 230 240 250
>>CCDS5567.1 RFC2 gene_id:5982|Hs108|chr7 (320 aa)
initn: 574 init1: 346 opt: 396 Z-score: 476.7 bits: 96.5 E(32554): 3.1e-20
Smith-Waterman score: 553; 31.7% identity (62.2% similar) in 315 aa overlap (12-324:28-308)
10 20 30 40
pF1KB3 METSALKQQEQPAATKIRNLPWVEKYRPQTLNDLISHQDILSTI
:... .::::::::: ::......: .: .
CCDS55 MEVEAVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRL
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB3 QKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIIRGP
. : : .:.... ::::::::..:: :. : . . .::::::.:
CCDS55 EVFAREGNVPNIIIAGPPGTGKTTSILCLARALL-GPALKDAMLELNASND---------
70 80 90 100 110
110 120 130 140 150 160
pF1KB3 ILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPA
.::. ::.::::..: ....::: : :: .:::
CCDS55 ------------------------SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEP
120 130 140
170 180 190 200 210 220
pF1KB3 LQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTN
.::::. .:. :: .. :: .:.:.:.: ..::..:.. ..::::.::: ::::
CCDS55 IQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTF
150 160 170 180 190 200
230 240 250 260 270 280
pF1KB3 MAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRKLKTLK--GLALHDILTEIH
.:: .. :.:. .: . .... .: .. ::. : : : . .::. .:
CCDS55 SGFGFINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIF
210 220 230 240 250 260
290 300 310 320 330
pF1KB3 LFVHRVDFPSSVRIHLLTKMADIEYRLSVGTNEKIQLSSLIAAFQVTRDLIVAEA
. .. ...... ... ..... :.: .:...:.:
CCDS55 RVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS
270 280 290 300 310 320
337 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:31:53 2016 done: Fri Nov 4 02:31:53 2016
Total Scan time: 2.530 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]