Result of FASTA (omim) for
pF1KB3484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3484, 211 aa
1>>>pF1KB3484 211 - 211 aa - 211 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7478+/-0.000325; mu= 13.2923+/- 0.020
mean_var=87.9727+/-16.936, 0's: 0 Z-trim(116.5): 22 B-trim: 0 in 0/54
Lambda= 0.136742
statistics sampled from 27768 (27790) to 27768 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.326), width: 16
Scan time: 5.390
The best scores are: opt bits E(85289)
NP_003816 (OMIM: 602534) synaptosomal-associated p ( 211) 1383 282.0 4.8e-76
XP_016878182 (OMIM: 602534) PREDICTED: synaptosoma ( 213) 1254 256.6 2.2e-68
XP_016878183 (OMIM: 602534) PREDICTED: synaptosoma ( 213) 1254 256.6 2.2e-68
XP_006720788 (OMIM: 602534) PREDICTED: synaptosoma ( 222) 825 172.0 6.8e-43
XP_016878181 (OMIM: 602534) PREDICTED: synaptosoma ( 224) 696 146.5 3.1e-35
NP_570710 (OMIM: 602534) synaptosomal-associated p ( 158) 581 123.7 1.6e-28
XP_005260865 (OMIM: 600322,616330) PREDICTED: syna ( 206) 488 105.5 6.6e-23
NP_001309834 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309839 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309837 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309833 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309835 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309832 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309838 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_001309836 (OMIM: 600322,616330) synaptosomal-as ( 206) 488 105.5 6.6e-23
NP_570824 (OMIM: 600322,616330) synaptosomal-assoc ( 206) 488 105.5 6.6e-23
XP_016883512 (OMIM: 600322,616330) PREDICTED: syna ( 136) 476 103.0 2.5e-22
NP_003072 (OMIM: 600322,616330) synaptosomal-assoc ( 206) 466 101.1 1.3e-21
XP_016883511 (OMIM: 600322,616330) PREDICTED: syna ( 206) 466 101.1 1.3e-21
XP_016883510 (OMIM: 600322,616330) PREDICTED: syna ( 206) 466 101.1 1.3e-21
NP_001309831 (OMIM: 600322,616330) synaptosomal-as ( 206) 466 101.1 1.3e-21
>>NP_003816 (OMIM: 602534) synaptosomal-associated prote (211 aa)
initn: 1383 init1: 1383 opt: 1383 Z-score: 1486.3 bits: 282.0 E(85289): 4.8e-76
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
130 140 150 160 170 180
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
:::::::::::::::::::::::::::::::
NP_003 NPQIKRITDKADTNRDRIDIANARAKKLIDS
190 200 210
>>XP_016878182 (OMIM: 602534) PREDICTED: synaptosomal-as (213 aa)
initn: 1254 init1: 1254 opt: 1254 Z-score: 1348.7 bits: 256.6 E(85289): 2.2e-68
Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
130 140 150 160 170 180
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
::::::::::
XP_016 NPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC
190 200 210
>>XP_016878183 (OMIM: 602534) PREDICTED: synaptosomal-as (213 aa)
initn: 1254 init1: 1254 opt: 1254 Z-score: 1348.7 bits: 256.6 E(85289): 2.2e-68
Smith-Waterman score: 1254; 100.0% identity (100.0% similar) in 190 aa overlap (1-190:1-190)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
130 140 150 160 170 180
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
::::::::::
XP_016 NPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC
190 200 210
>>XP_006720788 (OMIM: 602534) PREDICTED: synaptosomal-as (222 aa)
initn: 806 init1: 806 opt: 825 Z-score: 891.1 bits: 172.0 E(85289): 6.8e-43
Smith-Waterman score: 1351; 95.0% identity (95.0% similar) in 222 aa overlap (1-211:1-222)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNR-----------TKNFESGKAYKTTWGDGGEN
::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_006 QINKDMRETEKTLTELNKCCGLCVCPCNRFSDVGCFYETRTKNFESGKAYKTTWGDGGEN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
::::::::::::::::::::::::::::::::::::::::::
XP_006 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
190 200 210 220
>>XP_016878181 (OMIM: 602534) PREDICTED: synaptosomal-as (224 aa)
initn: 677 init1: 677 opt: 696 Z-score: 753.5 bits: 146.5 E(85289): 3.1e-35
Smith-Waterman score: 1222; 94.5% identity (94.5% similar) in 201 aa overlap (1-190:1-201)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNR-----------TKNFESGKAYKTTWGDGGEN
::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_016 QINKDMRETEKTLTELNKCCGLCVCPCNRFSDVGCFYETRTKNFESGKAYKTTWGDGGEN
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB3 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SPCNVVSKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDM
130 140 150 160 170 180
170 180 190 200 210
pF1KB3 ALNIGNEIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::::::::::::::::::::
XP_016 ALNIGNEIDAQNPQIKRITDKVKAFYCHKKMRHPVQCFSNRHLC
190 200 210 220
>>NP_570710 (OMIM: 602534) synaptosomal-associated prote (158 aa)
initn: 615 init1: 581 opt: 581 Z-score: 633.0 bits: 123.7 E(85289): 1.6e-28
Smith-Waterman score: 892; 74.4% identity (74.4% similar) in 211 aa overlap (1-211:1-158)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_570 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::
NP_570 QINKDMRETEKTLTELNKCCGLCVCPCNS-------------------------------
70 80
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::
NP_570 ----------------------ITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
90 100 110 120
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
:::::::::::::::::::::::::::::::
NP_570 NPQIKRITDKADTNRDRIDIANARAKKLIDS
130 140 150
>>XP_005260865 (OMIM: 600322,616330) PREDICTED: synaptos (206 aa)
initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
XP_005 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
XP_005 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
XP_005 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
XP_005 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
>>NP_001309834 (OMIM: 600322,616330) synaptosomal-associ (206 aa)
initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
>>NP_001309839 (OMIM: 600322,616330) synaptosomal-associ (206 aa)
initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
>>NP_001309837 (OMIM: 600322,616330) synaptosomal-associ (206 aa)
initn: 760 init1: 426 opt: 488 Z-score: 532.2 bits: 105.5 E(85289): 6.6e-23
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
NP_001 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
NP_001 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
NP_001 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
NP_001 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
211 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:10:09 2016 done: Sat Nov 5 05:10:10 2016
Total Scan time: 5.390 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]