Result of FASTA (ccds) for
pF1KB3484
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3484, 211 aa
1>>>pF1KB3484 211 - 211 aa - 211 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9765+/-0.000756; mu= 11.6894+/- 0.046
mean_var=84.5946+/-16.151, 0's: 0 Z-trim(109.4): 11 B-trim: 0 in 0/53
Lambda= 0.139445
statistics sampled from 10880 (10890) to 10880 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.717), E-opt: 0.2 (0.335), width: 16
Scan time: 2.110
The best scores are: opt bits E(32554)
CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 ( 211) 1383 287.3 4.7e-78
CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 ( 158) 581 125.9 1.4e-29
CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 488 107.2 7.4e-24
CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 ( 206) 466 102.8 1.6e-22
>>CCDS10087.1 SNAP23 gene_id:8773|Hs108|chr15 (211 aa)
initn: 1383 init1: 1383 opt: 1383 Z-score: 1514.7 bits: 287.3 E(32554): 4.7e-78
Smith-Waterman score: 1383; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
130 140 150 160 170 180
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
:::::::::::::::::::::::::::::::
CCDS10 NPQIKRITDKADTNRDRIDIANARAKKLIDS
190 200 210
>>CCDS10088.1 SNAP23 gene_id:8773|Hs108|chr15 (158 aa)
initn: 615 init1: 581 opt: 581 Z-score: 644.6 bits: 125.9 E(32554): 1.4e-29
Smith-Waterman score: 892; 74.4% identity (74.4% similar) in 211 aa overlap (1-211:1-158)
10 20 30 40 50 60
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 QINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVVSKQPG
::::::::::::::::::::::::::::
CCDS10 QINKDMRETEKTLTELNKCCGLCVCPCNS-------------------------------
70 80
130 140 150 160 170 180
pF1KB3 PVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
::::::::::::::::::::::::::::::::::::::
CCDS10 ----------------------ITNDAREDEMEENLTQVGSILGNLKDMALNIGNEIDAQ
90 100 110 120
190 200 210
pF1KB3 NPQIKRITDKADTNRDRIDIANARAKKLIDS
:::::::::::::::::::::::::::::::
CCDS10 NPQIKRITDKADTNRDRIDIANARAKKLIDS
130 140 150
>>CCDS13110.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa)
initn: 760 init1: 426 opt: 488 Z-score: 541.8 bits: 107.2 E(32554): 7.4e-24
Smith-Waterman score: 784; 60.5% identity (82.9% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.::
CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLERI
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::.:::::::.:.::.::.:.: :::::::::. : :. ::: .:: :. .::
CCDS13 EEGMDQINKDMKEAEKNLTDLGKFCGLCVCPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
CCDS13 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
CCDS13 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
>>CCDS13109.1 SNAP25 gene_id:6616|Hs108|chr20 (206 aa)
initn: 720 init1: 404 opt: 466 Z-score: 517.9 bits: 102.8 E(32554): 1.6e-22
Smith-Waterman score: 762; 57.6% identity (82.4% similar) in 205 aa overlap (7-211:12-205)
10 20 30 40 50
pF1KB3 MDNLSSEEIQQRAHQITDESLESTRRILGLAIESQDAGIKTITMLDEQKEQLNRI
::.:.:: :..:::::::::.: :. ::.::::.:..::::: :::.:.
CCDS13 MAEDADMRNELEEMQRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 EEGLDQINKDMRETEKTLTELNKCCGLCVCPCNRTKNFESGKAYKTTWGDGGENSPCNVV
:::...::.::.:.::.: .:.::::: .::::. : :. ::: .:: :. .::
CCDS13 EEGMNHINQDMKEAEKNLKDLGKCCGLFICPCNKLK---SSDAYKKAWG----NNQDGVV
70 80 90 100 110
120 130 140 150 160 170
pF1KB3 SKQPGPVTNGQLQQPTTGAASGGYIKRITNDAREDEMEENLTQVGSILGNLKDMALNIGN
..::. :.. . :. : :::.:.:.::::::.::.::: ::..:.:::. :::..::
CCDS13 ASQPARVVDEREQM----AISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGN
120 130 140 150 160
180 190 200 210
pF1KB3 EIDAQNPQIKRITDKADTNRDRIDIANARAKKLIDS
:::.:: :: :: .:::.:. ::: :: :: :.. :
CCDS13 EIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGSG
170 180 190 200
211 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:10:08 2016 done: Sat Nov 5 05:10:09 2016
Total Scan time: 2.110 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]