FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3483, 253 aa
  1>>>pF1KB3483 253 - 253 aa - 253 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.6048+/-0.00108; mu= 6.3448+/- 0.065
 mean_var=224.9707+/-46.208, 0's: 0 Z-trim(111.8): 53  B-trim: 114 in 1/49
 Lambda= 0.085509
 statistics sampled from 12593 (12639) to 12593 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.388), width:  16
 Scan time:  2.070

The best scores are:                                      opt bits E(32554)
CCDS13080.1 PRNP gene_id:5621|Hs108|chr20          ( 253) 1854 240.9 6.3e-64


>>CCDS13080.1 PRNP gene_id:5621|Hs108|chr20               (253 aa)
 initn: 1854 init1: 1854 opt: 1854  Z-score: 1261.2  bits: 240.9 E(32554): 6.3e-64
Smith-Waterman score: 1854; 100.0% identity (100.0% similar) in 253 aa overlap (1-253:1-253)

               10        20        30        40        50        60
pF1KB3 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NITIKQHTVTTTTKGENFTETDVKMMERVVEQMCITQYERESQAYYQRGSSMVLFSSPPV
              190       200       210       220       230       240

              250   
pF1KB3 ILLISFLIFLIVG
       :::::::::::::
CCDS13 ILLISFLIFLIVG
              250   




253 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:30:49 2016 done: Fri Nov  4 02:30:50 2016
 Total Scan time:  2.070 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]