Result of FASTA (omim) for
pF1KB3480
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3480, 316 aa
1>>>pF1KB3480 316 - 316 aa - 316 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6315+/-0.000361; mu= 15.1766+/- 0.022
mean_var=122.2967+/-24.927, 0's: 0 Z-trim(116.0): 173 B-trim: 36 in 2/57
Lambda= 0.115976
statistics sampled from 26605 (26799) to 26605 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.314), width: 16
Scan time: 7.900
The best scores are: opt bits E(85289)
NP_067674 (OMIM: 146790,152700,611162) low affinit ( 316) 2117 365.4 8.8e-101
XP_016856152 (OMIM: 146790,152700,611162) PREDICTE ( 368) 2107 363.8 3.1e-100
NP_001129691 (OMIM: 146790,152700,611162) low affi ( 317) 2105 363.4 3.6e-100
XP_011507589 (OMIM: 146790,152700,611162) PREDICTE ( 369) 2095 361.8 1.3e-99
XP_016856154 (OMIM: 146790,152700,611162) PREDICTE ( 353) 2088 360.6 2.7e-99
XP_016856153 (OMIM: 146790,152700,611162) PREDICTE ( 353) 2088 360.6 2.7e-99
XP_011507592 (OMIM: 146790,152700,611162) PREDICTE ( 317) 2086 360.2 3.2e-99
NP_963857 (OMIM: 188030,612169) low affinity immun ( 323) 1789 310.5 3e-84
XP_011507593 (OMIM: 146790,152700,611162) PREDICTE ( 261) 1636 284.8 1.3e-76
XP_016856157 (OMIM: 146790,152700,611162) PREDICTE ( 275) 1403 245.8 7.4e-65
XP_016856156 (OMIM: 146790,152700,611162) PREDICTE ( 276) 1391 243.8 3e-64
XP_016856155 (OMIM: 146790,152700,611162) PREDICTE ( 328) 1391 243.9 3.3e-64
XP_016856161 (OMIM: 152700,604590,611162) PREDICTE ( 291) 1361 238.8 1e-62
NP_001002274 (OMIM: 152700,604590,611162) low affi ( 291) 1361 238.8 1e-62
NP_001002273 (OMIM: 152700,604590,611162) low affi ( 290) 1354 237.7 2.3e-62
XP_016856160 (OMIM: 152700,604590,611162) PREDICTE ( 310) 1336 234.7 1.9e-61
NP_003992 (OMIM: 152700,604590,611162) low affinit ( 310) 1336 234.7 1.9e-61
XP_016856158 (OMIM: 152700,604590,611162) PREDICTE ( 324) 1336 234.7 2e-61
NP_001177757 (OMIM: 152700,604590,611162) low affi ( 303) 1329 233.5 4.2e-61
NP_001002275 (OMIM: 152700,604590,611162) low affi ( 309) 1329 233.5 4.3e-61
XP_016856159 (OMIM: 152700,604590,611162) PREDICTE ( 323) 1329 233.5 4.4e-61
XP_011507594 (OMIM: 152700,604590,611162) PREDICTE ( 234) 1160 205.1 1.2e-52
NP_001257964 (OMIM: 610665) low affinity immunoglo ( 268) 641 118.3 1.7e-26
NP_001231682 (OMIM: 610665) low affinity immunoglo ( 269) 633 117.0 4.4e-26
NP_000561 (OMIM: 610665) low affinity immunoglobul ( 233) 626 115.7 9.1e-26
NP_001121064 (OMIM: 146740,615707) low affinity im ( 358) 625 115.8 1.3e-25
NP_001121068 (OMIM: 146740,615707) low affinity im ( 253) 618 114.4 2.4e-25
NP_000560 (OMIM: 146740,615707) low affinity immun ( 359) 617 114.4 3.4e-25
NP_001316049 (OMIM: 146740,615707) low affinity im ( 254) 610 113.1 6.1e-25
NP_001121065 (OMIM: 146740,615707) low affinity im ( 254) 610 113.1 6.1e-25
NP_001121067 (OMIM: 146740,615707) low affinity im ( 254) 610 113.1 6.1e-25
NP_001257965 (OMIM: 610665) low affinity immunoglo ( 216) 595 110.5 3.1e-24
NP_000557 (OMIM: 146760) high affinity immunoglobu ( 374) 565 105.8 1.5e-22
NP_001017986 (OMIM: 601502) high affinity immunogl ( 280) 559 104.6 2.4e-22
XP_005245014 (OMIM: 146760) PREDICTED: high affini ( 375) 555 104.1 4.7e-22
NP_001231839 (OMIM: 601502) high affinity immunogl ( 224) 549 102.8 6.7e-22
XP_016856150 (OMIM: 601502) PREDICTED: high affini ( 281) 548 102.8 8.7e-22
NP_001992 (OMIM: 147140) high affinity immunoglobu ( 257) 456 87.3 3.5e-17
NP_001275758 (OMIM: 609251) Fc receptor-like B iso ( 318) 425 82.3 1.5e-15
NP_001275760 (OMIM: 609251) Fc receptor-like B iso ( 275) 421 81.5 2.1e-15
NP_001002901 (OMIM: 609251) Fc receptor-like B iso ( 426) 421 81.7 2.8e-15
NP_001307170 (OMIM: 609251) Fc receptor-like B iso ( 426) 421 81.7 2.8e-15
NP_001275759 (OMIM: 609251) Fc receptor-like B iso ( 311) 407 79.2 1.2e-14
NP_001275761 (OMIM: 609251) Fc receptor-like B iso ( 268) 403 78.5 1.7e-14
NP_001316051 (OMIM: 146740,615707) low affinity im ( 273) 349 69.5 9e-12
XP_011508335 (OMIM: 605877) PREDICTED: Fc receptor ( 844) 349 70.0 1.9e-11
XP_011508333 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 349 70.1 1.9e-11
XP_011508334 (OMIM: 605877) PREDICTED: Fc receptor ( 884) 349 70.1 1.9e-11
NP_112571 (OMIM: 605877) Fc receptor-like protein ( 977) 349 70.1 2.1e-11
NP_001182317 (OMIM: 605877) Fc receptor-like prote ( 998) 349 70.1 2.1e-11
>>NP_067674 (OMIM: 146790,152700,611162) low affinity im (316 aa)
initn: 2117 init1: 2117 opt: 2117 Z-score: 1930.3 bits: 365.4 E(85289): 8.8e-101
Smith-Waterman score: 2117; 99.7% identity (100.0% similar) in 316 aa overlap (1-316:1-316)
10 20 30 40 50 60
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHSH
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
NP_067 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 SGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 SGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 RKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
250 260 270 280 290 300
310
pF1KB3 NIYLTLPPNDHVNSNN
::::::::::::::::
NP_067 NIYLTLPPNDHVNSNN
310
>>XP_016856152 (OMIM: 146790,152700,611162) PREDICTED: l (368 aa)
initn: 2139 init1: 2107 opt: 2107 Z-score: 1920.5 bits: 363.8 E(85289): 3.1e-100
Smith-Waterman score: 2107; 99.4% identity (100.0% similar) in 315 aa overlap (1-315:1-315)
10 20 30 40 50 60
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHSH
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_016 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 SGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYC
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 RKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
250 260 270 280 290 300
310
pF1KB3 NIYLTLPPNDHVNSNN
:::::::::::::.:
XP_016 NIYLTLPPNDHVNTNKAFTLFWNTSCQKGKLQVNCQWRLLTSCTAIFPVQLPEGCDLLRE
310 320 330 340 350 360
>>NP_001129691 (OMIM: 146790,152700,611162) low affinity (317 aa)
initn: 1908 init1: 1908 opt: 2105 Z-score: 1919.4 bits: 363.4 E(85289): 3.6e-100
Smith-Waterman score: 2105; 99.4% identity (99.7% similar) in 317 aa overlap (1-316:1-317)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_001 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
250 260 270 280 290 300
300 310
pF1KB3 KNIYLTLPPNDHVNSNN
:::::::::::::::::
NP_001 KNIYLTLPPNDHVNSNN
310
>>XP_011507589 (OMIM: 146790,152700,611162) PREDICTED: l (369 aa)
initn: 2156 init1: 1897 opt: 2095 Z-score: 1909.6 bits: 361.8 E(85289): 1.3e-99
Smith-Waterman score: 2095; 99.1% identity (99.7% similar) in 316 aa overlap (1-315:1-316)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_011 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_011 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
250 260 270 280 290 300
300 310
pF1KB3 KNIYLTLPPNDHVNSNN
::::::::::::::.:
XP_011 KNIYLTLPPNDHVNTNKAFTLFWNTSCQKGKLQVNCQWRLLTSCTAIFPVQLPEGCDLLR
310 320 330 340 350 360
>>XP_016856154 (OMIM: 146790,152700,611162) PREDICTED: l (353 aa)
initn: 2149 init1: 1890 opt: 2088 Z-score: 1903.5 bits: 360.6 E(85289): 2.7e-99
Smith-Waterman score: 2088; 99.0% identity (99.7% similar) in 315 aa overlap (1-314:1-315)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_016 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
250 260 270 280 290 300
300 310
pF1KB3 KNIYLTLPPNDHVNSNN
::::::::::::::.
XP_016 KNIYLTLPPNDHVNTEIRTPADLNGMFWIEESGKWPQFTKSQPDKNQCDFTAQ
310 320 330 340 350
>>XP_016856153 (OMIM: 146790,152700,611162) PREDICTED: l (353 aa)
initn: 2149 init1: 1890 opt: 2088 Z-score: 1903.5 bits: 360.6 E(85289): 2.7e-99
Smith-Waterman score: 2088; 99.0% identity (99.7% similar) in 315 aa overlap (1-314:1-315)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_016 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_016 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
250 260 270 280 290 300
300 310
pF1KB3 KNIYLTLPPNDHVNSNN
::::::::::::::.
XP_016 KNIYLTLPPNDHVNTEIRTPADLNGMFWIEESGKWPQFTKSQPDKNQCDFTAQ
310 320 330 340 350
>>XP_011507592 (OMIM: 146790,152700,611162) PREDICTED: l (317 aa)
initn: 1889 init1: 1889 opt: 2086 Z-score: 1902.3 bits: 360.2 E(85289): 3.2e-99
Smith-Waterman score: 2086; 99.4% identity (99.7% similar) in 314 aa overlap (1-313:1-314)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_011 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_011 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
250 260 270 280 290 300
300 310
pF1KB3 KNIYLTLPPNDHVNSNN
::::::::::::::
XP_011 KNIYLTLPPNDHVNRLY
310
>>NP_963857 (OMIM: 188030,612169) low affinity immunoglo (323 aa)
initn: 1185 init1: 1151 opt: 1789 Z-score: 1633.6 bits: 310.5 E(85289): 3e-84
Smith-Waterman score: 1789; 85.5% identity (91.8% similar) in 318 aa overlap (1-316:10-323)
10 20 30 40
pF1KB3 MTMETQMSQNVCPRNLW--LLQPLTVLLLLASADSQAAPPKAVLKLEPPWI
.. :.. .. :. : .: .::.: : . :::::::::::: ::
NP_963 MGILSFLPVLATESDWADCKSPQP-WGHMLLWTAVLFLAPVAGTPAAPPKAVLKLEPQWI
10 20 30 40 50
50 60 70 80 90 100
pF1KB3 NVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTS
::::::::::::.:..::::::: ::::::::::::::::::::::::::::::::::::
NP_963 NVLQEDSVTLTCRGTHSPESDSIPWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTS
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB3 LSDPVHLTVLSEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDP
:::::::::::::::::::::::::::::.::::::::::::::::::::::.:::: ::
NP_963 LSDPVHLTVLSEWLVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSRSDP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB3 TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAA
.::::::::::::::::::::::::.::::::::::.:: ::::::::::: . ::::
NP_963 NFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAPS---SSPMGIIVAVVTGIAVAA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB3 IVAAVVALIYCRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMT
::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::::
NP_963 IVAAVVALIYCRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQPEETNNDYETADGGYMT
240 250 260 270 280 290
290 300 310
pF1KB3 LNPRAPTDDDKNIYLTLPPNDHVNSNN
:::::::::::::::::::::::::::
NP_963 LNPRAPTDDDKNIYLTLPPNDHVNSNN
300 310 320
>>XP_011507593 (OMIM: 146790,152700,611162) PREDICTED: l (261 aa)
initn: 1697 init1: 1438 opt: 1636 Z-score: 1496.3 bits: 284.8 E(85289): 1.3e-76
Smith-Waterman score: 1636; 98.4% identity (99.2% similar) in 251 aa overlap (1-250:1-251)
10 20 30 40 50
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAA-PPKAVLKLEPPWINVLQEDSVTL
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
XP_011 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAAPPKAVLKLEPPWINVLQEDSVTL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB3 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB3 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHS
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
XP_011 SEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HSGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIY
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 CRKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDD
::::::::. :
XP_011 CRKKRISATWTSNDCHQKETT
250 260
>>XP_016856157 (OMIM: 146790,152700,611162) PREDICTED: l (275 aa)
initn: 1435 init1: 1403 opt: 1403 Z-score: 1285.4 bits: 245.8 E(85289): 7.4e-65
Smith-Waterman score: 1783; 86.7% identity (87.0% similar) in 316 aa overlap (1-316:1-275)
10 20 30 40 50 60
pF1KB3 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTMETQMSQNVCPRNLWLLQPLTVLLLLASADSQAAPPKAVLKLEPPWINVLQEDSVTLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSRLDPTFSIPQANHSH
:::::::::::::::::::::::::::::::::::::::::::::.::::::::::::::
XP_016 EWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 SGDYHCTGNIGYTLFSSKPVTITVQVPSMGSSSPMGIIVAVVIATAVAAIVAAVVALIYC
:::::::::::::::::::::::::
XP_016 SGDYHCTGNIGYTLFSSKPVTITVQ-----------------------------------
190 200
250 260 270 280 290 300
pF1KB3 RKKRISANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ------ANSTDPVKAAQFEPPGRQMIAIRKRQLEETNNDYETADGGYMTLNPRAPTDDDK
210 220 230 240 250
310
pF1KB3 NIYLTLPPNDHVNSNN
::::::::::::::::
XP_016 NIYLTLPPNDHVNSNN
260 270
316 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:09:28 2016 done: Sat Nov 5 05:09:29 2016
Total Scan time: 7.900 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]