FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3432, 114 aa
  1>>>pF1KB3432 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.2814+/-0.000248; mu= 8.7579+/- 0.016
 mean_var=112.6181+/-22.555, 0's: 0 Z-trim(123.8): 10  B-trim: 0 in 0/58
 Lambda= 0.120857
 statistics sampled from 44296 (44306) to 44296 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.825), E-opt: 0.2 (0.519), width:  16
 Scan time:  5.240

The best scores are:                                      opt bits E(85289)
NP_000994 (OMIM: 180520) 60S acidic ribosomal prot ( 114)  742 138.1   3e-33
NP_998890 (OMIM: 180520) 60S acidic ribosomal prot (  89)  427 83.1 8.4e-17
NP_000995 (OMIM: 180530) 60S acidic ribosomal prot ( 115)  199 43.4 9.4e-05


>>NP_000994 (OMIM: 180520) 60S acidic ribosomal protein   (114 aa)
 initn: 742 init1: 742 opt: 742  Z-score: 718.0  bits: 138.1 E(85289): 3e-33
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KB3 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KB3 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
               70        80        90       100       110    

>>NP_998890 (OMIM: 180520) 60S acidic ribosomal protein   (89 aa)
 initn: 559 init1: 427 opt: 427  Z-score: 422.7  bits: 83.1 E(85289): 8.4e-17
Smith-Waterman score: 513; 78.1% identity (78.1% similar) in 114 aa overlap (1-114:1-89)

               10        20        30        40        50        60
pF1KB3 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
       ::::::::::::::::::::::::                         :::::::::::
NP_998 MASVSELACIYSALILHDDEVTVT-------------------------ALANVNIGSLI
               10        20                                 30     

               70        80        90       100       110    
pF1KB3 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_998 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
          40        50        60        70        80         

>>NP_000995 (OMIM: 180530) 60S acidic ribosomal protein   (115 aa)
 initn: 170 init1: 170 opt: 199  Z-score: 206.3  bits: 43.4 E(85289): 9.4e-05
Smith-Waterman score: 207; 48.5% identity (69.9% similar) in 103 aa overlap (15-114:26-115)

                          10        20        30         40        
pF1KB3            MASVSELACIYSALILHDDEVTVTEDKINALIKA-AGVNVEPFWPGLFA
                                :: .  . . .:..: .:.   : :.:     ..:
NP_000 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIE----DVIA
               10        20        30        40        50          

       50        60        70        80          90       100      
pF1KB3 KALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPA--EEKKVEAKKEESEESDD
       ..     ::.:  .: ::: : :..::: :. ::....:::  :::: : ::::::::::
NP_000 QG-----IGKLA-SVPAGG-AVAVSAAP-GSAAPAAGSAPAAAEEKKDE-KKEESEESDD
              60          70         80        90        100       

        110    
pF1KB3 DMGFGLFD
       ::::::::
NP_000 DMGFGLFD
       110     




114 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:04:55 2016 done: Sat Nov  5 05:04:56 2016
 Total Scan time:  5.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]