FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3432, 114 aa
  1>>>pF1KB3432 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3545+/-0.000594; mu= 8.8079+/- 0.037
 mean_var=121.3730+/-24.277, 0's: 0 Z-trim(116.7): 7  B-trim: 0 in 0/54
 Lambda= 0.116416
 statistics sampled from 17309 (17316) to 17309 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.532), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS10233.1 RPLP1 gene_id:6176|Hs108|chr15         ( 114)  742 133.5 2.8e-32
CCDS10234.1 RPLP1 gene_id:6176|Hs108|chr15         (  89)  427 80.5 1.9e-16


>>CCDS10233.1 RPLP1 gene_id:6176|Hs108|chr15              (114 aa)
 initn: 742 init1: 742 opt: 742  Z-score: 693.1  bits: 133.5 E(32554): 2.8e-32
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KB3 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KB3 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
               70        80        90       100       110    

>>CCDS10234.1 RPLP1 gene_id:6176|Hs108|chr15              (89 aa)
 initn: 559 init1: 427 opt: 427  Z-score: 408.6  bits: 80.5 E(32554): 1.9e-16
Smith-Waterman score: 513; 78.1% identity (78.1% similar) in 114 aa overlap (1-114:1-89)

               10        20        30        40        50        60
pF1KB3 MASVSELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLI
       ::::::::::::::::::::::::                         :::::::::::
CCDS10 MASVSELACIYSALILHDDEVTVT-------------------------ALANVNIGSLI
               10        20                                 30     

               70        80        90       100       110    
pF1KB3 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 CNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD
          40        50        60        70        80         




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:04:55 2016 done: Sat Nov  5 05:04:55 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]