Result of FASTA (omim) for
pF1KB3399
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3399, 186 aa
1>>>pF1KB3399 186 - 186 aa - 186 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.2629+/-0.000416; mu= 18.6094+/- 0.026
mean_var=57.8875+/-11.782, 0's: 0 Z-trim(110.1): 8 B-trim: 0 in 0/51
Lambda= 0.168571
statistics sampled from 18362 (18368) to 18362 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.587), E-opt: 0.2 (0.215), width: 16
Scan time: 5.060
The best scores are: opt bits E(85289)
NP_004856 (OMIM: 605521) TATA box-binding protein- ( 186) 1201 300.3 1.2e-81
NP_001240605 (OMIM: 605521) TATA box-binding prote ( 186) 1201 300.3 1.2e-81
XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bi ( 186) 1201 300.3 1.2e-81
NP_001165556 (OMIM: 168600,600075,607136) TATA-box ( 319) 460 120.3 3.2e-27
NP_003185 (OMIM: 168600,600075,607136) TATA-box-bi ( 339) 460 120.3 3.3e-27
NP_950248 (OMIM: 608964) TATA box-binding protein- ( 375) 451 118.1 1.6e-26
>>NP_004856 (OMIM: 605521) TATA box-binding protein-like (186 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 1586.8 bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
130 140 150 160 170 180
pF1KB3 SRKEIL
::::::
NP_004 SRKEIL
>>NP_001240605 (OMIM: 605521) TATA box-binding protein-l (186 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 1586.8 bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
130 140 150 160 170 180
pF1KB3 SRKEIL
::::::
NP_001 SRKEIL
>>XP_016867002 (OMIM: 605521) PREDICTED: TATA box-bindin (186 aa)
initn: 1201 init1: 1201 opt: 1201 Z-score: 1586.8 bits: 300.3 E(85289): 1.2e-81
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)
10 20 30 40 50 60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
130 140 150 160 170 180
pF1KB3 SRKEIL
::::::
XP_016 SRKEIL
>>NP_001165556 (OMIM: 168600,600075,607136) TATA-box-bin (319 aa)
initn: 437 init1: 359 opt: 460 Z-score: 609.8 bits: 120.3 E(85289): 3.2e-27
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:145-317)
10 20 30 40
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
. :.: . :.:.:. :::.. :. :.
NP_001 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
120 130 140 150 160 170
50 60 70 80 90 100
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
. . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_001 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
180 190 200 210 220 230
110 120 130 140 150 160
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
. :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....::
NP_001 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
240 250 260 270 280 290
170 180
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
.:.: . : :.:::.. ::
NP_001 AKVRAEIYEAFENIYPILKGFRKTT
300 310
>>NP_003185 (OMIM: 168600,600075,607136) TATA-box-bindin (339 aa)
initn: 437 init1: 359 opt: 460 Z-score: 609.5 bits: 120.3 E(85289): 3.3e-27
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:165-337)
10 20 30 40
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
. :.: . :.:.:. :::.. :. :.
NP_003 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
140 150 160 170 180 190
50 60 70 80 90 100
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
. . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_003 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
200 210 220 230 240 250
110 120 130 140 150 160
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
. :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....::
NP_003 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
260 270 280 290 300 310
170 180
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
.:.: . : :.:::.. ::
NP_003 AKVRAEIYEAFENIYPILKGFRKTT
320 330
>>NP_950248 (OMIM: 608964) TATA box-binding protein-like (375 aa)
initn: 371 init1: 371 opt: 451 Z-score: 597.1 bits: 118.1 E(85289): 1.6e-26
Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (13-178:202-369)
10 20 30 40
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
. :.: . :.:.:.::::.. :. :.
NP_950 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP
180 190 200 210 220 230
50 60 70 80 90 100
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
. . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
NP_950 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK
240 250 260 270 280 290
110 120 130 140 150 160
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
. :... :.. : ::: .. ... .:::::: :.. ::. . : .: :: .:....::
NP_950 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG
300 310 320 330 340 350
170 180
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
. .. . : :.:::..
NP_950 AKERSEIYEAFENIYPILKGFKKA
360 370
186 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:18:26 2016 done: Fri Nov 4 02:18:27 2016
Total Scan time: 5.060 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]