FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3399, 186 aa
  1>>>pF1KB3399 186 - 186 aa - 186 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9846+/-0.000925; mu= 14.2491+/- 0.056
 mean_var=55.1945+/-11.178, 0's: 0 Z-trim(103.7): 17  B-trim: 0 in 0/48
 Lambda= 0.172634
 statistics sampled from 7534 (7538) to 7534 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.615), E-opt: 0.2 (0.232), width:  16
 Scan time:  1.830

The best scores are:                                      opt bits E(32554)
CCDS5168.1 TBPL1 gene_id:9519|Hs108|chr6           ( 186) 1201 307.1   4e-84
CCDS55077.1 TBP gene_id:6908|Hs108|chr6            ( 319)  460 122.7 2.3e-28
CCDS5315.1 TBP gene_id:6908|Hs108|chr6             ( 339)  460 122.7 2.4e-28
CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14        ( 375)  451 120.5 1.2e-27


>>CCDS5168.1 TBPL1 gene_id:9519|Hs108|chr6                (186 aa)
 initn: 1201 init1: 1201 opt: 1201  Z-score: 1623.7  bits: 307.1 E(32554): 4e-84
Smith-Waterman score: 1201; 100.0% identity (100.0% similar) in 186 aa overlap (1-186:1-186)

               10        20        30        40        50        60
pF1KB3 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYKRDVGKVLMKLRKPRITATI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 WSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFKVVNVLAVCNMPFEIRLPEF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51 TKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTGPNVKAVATAVEQIYPFVFE
              130       140       150       160       170       180

             
pF1KB3 SRKEIL
       ::::::
CCDS51 SRKEIL
             

>>CCDS55077.1 TBP gene_id:6908|Hs108|chr6                 (319 aa)
 initn: 437 init1: 359 opt: 460  Z-score: 622.7  bits: 122.7 E(32554): 2.3e-28
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:145-317)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:. :::.. :. :. 
CCDS55 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
          120       130       140       150       160       170    

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
CCDS55 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
          180       190       200       210       220       230    

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
CCDS55 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
          240       250       260       270       280       290    

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        .:.: .  : :.:::..   ::   
CCDS55 AKVRAEIYEAFENIYPILKGFRKTT 
          300       310          

>>CCDS5315.1 TBP gene_id:6908|Hs108|chr6                  (339 aa)
 initn: 437 init1: 359 opt: 460  Z-score: 622.3  bits: 122.7 E(32554): 2.4e-28
Smith-Waterman score: 460; 42.2% identity (74.0% similar) in 173 aa overlap (13-183:165-337)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:. :::.. :. :. 
CCDS53 TTPLYPSPMTPMTPITPATPASESSGIVPQLQNIVSTVNLGCKLDLKTIALRARNAEYNP
          140       150       160       170       180       190    

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
CCDS53 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPAKFLDFK
          200       210       220       230       240       250    

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
CCDS53 IQNMVGSCDVKFPIRLEGLVLTHQQFSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTG
          260       270       280       290       300       310    

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        .:.: .  : :.:::..   ::   
CCDS53 AKVRAEIYEAFENIYPILKGFRKTT 
          320       330          

>>CCDS9724.1 TBPL2 gene_id:387332|Hs108|chr14             (375 aa)
 initn: 371 init1: 371 opt: 451  Z-score: 609.5  bits: 120.5 E(32554): 1.2e-27
Smith-Waterman score: 451; 41.7% identity (75.0% similar) in 168 aa overlap (13-178:202-369)

                                 10        20        30        40  
pF1KB3                   MDADSDVALDILITNVVCVFRTRCHLNLRKIALEGANVIYK-
                                     . :.: .    :.:.:.::::.. :. :. 
CCDS97 KPNSDSLSLASITPMTPMTPISECCGIVPQLQNIVSTVNLACKLDLKKIALHAKNAEYNP
             180       190       200       210       220       230 

              50        60        70        80        90       100 
pF1KB3 RDVGKVLMKLRKPRITATIWSSGKIICTGATSEEEAKFGARRLARSLQKLGFQVIFTDFK
       .  . :.:..:.:: :: :.::::..:::: :::.....::. :: .::::: . : :::
CCDS97 KRFAAVIMRIREPRTTALIFSSGKMVCTGAKSEEQSRLAARKYARVVQKLGFPARFLDFK
             240       250       260       270       280       290 

             110       120       130       140       150       160 
pF1KB3 VVNVLAVCNMPFEIRLPEFTKNNRPHASYEPELHPAVCYRIKSLRATLQIFSTGSITVTG
       . :... :.. : :::  .. ...  .:::::: :.. ::. . : .: :: .:....::
CCDS97 IQNMVGSCDVRFPIRLEGLVLTHQQFSSYEPELFPGLIYRMVKPRIVLLIFVSGKVVLTG
             300       310       320       330       340       350 

              170       180      
pF1KB3 PNVKA-VATAVEQIYPFVFESRKEIL
        . .. .  : :.:::..        
CCDS97 AKERSEIYEAFENIYPILKGFKKA  
             360       370       




186 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:18:26 2016 done: Fri Nov  4 02:18:26 2016
 Total Scan time:  1.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]