FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3385, 188 aa
  1>>>pF1KB3385 188 - 188 aa - 188 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2860+/-0.000329; mu= 13.2168+/- 0.020
 mean_var=64.2267+/-13.062, 0's: 0 Z-trim(115.8): 3  B-trim: 1353 in 1/49
 Lambda= 0.160036
 statistics sampled from 26544 (26546) to 26544 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.704), E-opt: 0.2 (0.311), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(85289)
NP_000970 (OMIM: 604179) 60S ribosomal protein L18 ( 188) 1234 293.1 1.8e-79
NP_001257419 (OMIM: 604179) 60S ribosomal protein  ( 159) 1037 247.6 7.6e-66


>>NP_000970 (OMIM: 604179) 60S ribosomal protein L18 iso  (188 aa)
 initn: 1234 init1: 1234 opt: 1234  Z-score: 1547.8  bits: 293.1 E(85289): 1.8e-79
Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB3 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
              130       140       150       160       170       180

               
pF1KB3 RASRGYKN
       ::::::::
NP_000 RASRGYKN
               

>>NP_001257419 (OMIM: 604179) 60S ribosomal protein L18   (159 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1303.1  bits: 247.6 E(85289): 7.6e-66
Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 158 aa overlap (31-188:2-159)

               10        20        30        40        50        60
pF1KB3 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
                                     ::::::::::::::::::::::::::::::
NP_001                              MLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
                                            10        20        30 

               70        80        90       100       110       120
pF1KB3 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB3 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
             100       110       120       130       140       150 

               
pF1KB3 RASRGYKN
       ::::::::
NP_001 RASRGYKN
               




188 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:15:36 2016 done: Fri Nov  4 02:15:37 2016
 Total Scan time:  4.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]