FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3385, 188 aa
  1>>>pF1KB3385 188 - 188 aa - 188 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3338+/-0.000722; mu= 12.9412+/- 0.044
 mean_var=64.6956+/-12.746, 0's: 0 Z-trim(109.1): 5  B-trim: 0 in 0/50
 Lambda= 0.159455
 statistics sampled from 10666 (10668) to 10666 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.328), width:  16
 Scan time:  2.030

The best scores are:                                      opt bits E(32554)
CCDS12726.1 RPL18 gene_id:6141|Hs108|chr19         ( 188) 1234 292.0 1.4e-79
CCDS58669.1 RPL18 gene_id:6141|Hs108|chr19         ( 159) 1037 246.7 5.4e-66


>>CCDS12726.1 RPL18 gene_id:6141|Hs108|chr19              (188 aa)
 initn: 1234 init1: 1234 opt: 1234  Z-score: 1542.1  bits: 292.0 E(32554): 1.4e-79
Smith-Waterman score: 1234; 100.0% identity (100.0% similar) in 188 aa overlap (1-188:1-188)

               10        20        30        40        50        60
pF1KB3 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
              130       140       150       160       170       180

               
pF1KB3 RASRGYKN
       ::::::::
CCDS12 RASRGYKN
               

>>CCDS58669.1 RPL18 gene_id:6141|Hs108|chr19              (159 aa)
 initn: 1037 init1: 1037 opt: 1037  Z-score: 1298.3  bits: 246.7 E(32554): 5.4e-66
Smith-Waterman score: 1037; 100.0% identity (100.0% similar) in 158 aa overlap (31-188:2-159)

               10        20        30        40        50        60
pF1KB3 MGVDIRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
                                     ::::::::::::::::::::::::::::::
CCDS58                              MLYRFLARRTNSTFNQVVLKRLFMSRTNRPP
                                            10        20        30 

               70        80        90       100       110       120
pF1KB3 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKI
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB3 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 LTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGR
             100       110       120       130       140       150 

               
pF1KB3 RASRGYKN
       ::::::::
CCDS58 RASRGYKN
               




188 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:15:35 2016 done: Fri Nov  4 02:15:36 2016
 Total Scan time:  2.030 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]