Result of FASTA (omim) for
pF1KB3332
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3332, 1130 aa
1>>>pF1KB3332 1130 - 1130 aa - 1130 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 18.0245+/-0.000519; mu= -35.4779+/- 0.033
mean_var=942.8132+/-190.868, 0's: 0 Z-trim(126.2): 47 B-trim: 33 in 1/60
Lambda= 0.041770
statistics sampled from 51611 (51690) to 51611 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.606), width: 16
Scan time: 22.730
The best scores are: opt bits E(85289)
NP_055204 (OMIM: 609455) proline-, glutamic acid- (1180) 7674 478.8 8.4e-134
NP_001265170 (OMIM: 609455) proline-, glutamic aci ( 906) 5637 356.0 6.1e-97
>>NP_055204 (OMIM: 609455) proline-, glutamic acid- and (1180 aa)
initn: 7674 init1: 7674 opt: 7674 Z-score: 2523.2 bits: 478.8 E(85289): 8.4e-134
Smith-Waterman score: 7674; 100.0% identity (100.0% similar) in 1130 aa overlap (1-1130:51-1180)
10 20 30
pF1KB3 MAAAVLSGPSAGSAAGVPGGTGGLSAVSSG
::::::::::::::::::::::::::::::
NP_055 QPPPHAPSPVGGRRGVFASSRHATTGTRGKMAAAVLSGPSAGSAAGVPGGTGGLSAVSSG
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB3 PRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLMCLLRLHGSVGGAQNLSALGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PRLRLLLLESVSGLLQPRTGSAVAPVHPPNRSAPHLPGLMCLLRLHGSVGGAQNLSALGA
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB3 LVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQTQDPPATMEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LVSLSNARLSSIKTRFEGLCLLSLLVGESPTELFQQHCVSWLRSIQQVLQTQDPPATMEL
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB3 AVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AVAVLRDLLRYAAQLPALFRDISMNHLPGLLTSLLGLRPECEQSALEGMKACMTYFPRAC
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB3 GSLKGKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GSLKGKLASFFLSRVDALSPQLQQLACECYSRLPSLGAGFSQGLKHTESWEQELHSLLAS
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB3 LHTLLGALYEGAETAPVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LHTLLGALYEGAETAPVQNEGPGVEMLLSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEF
330 340 350 360 370 380
340 350 360 370 380 390
pF1KB3 GAPVSVPVQEILDFICRTLSVSSKNISLHGDGPLRLLLLPSIHLEALDLLSALILACGSR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GAPVSVPVQEILDFICRTLSVSSKNISLHGDGPLRLLLLPSIHLEALDLLSALILACGSR
390 400 410 420 430 440
400 410 420 430 440 450
pF1KB3 LLRFGILIGRLLPQVLNSWSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LLRFGILIGRLLPQVLNSWSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQ
450 460 470 480 490 500
460 470 480 490 500 510
pF1KB3 GGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 GGASGEALLTHLLSDISPPADALKLRSPRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSH
510 520 530 540 550 560
520 530 540 550 560 570
pF1KB3 RKGDSNANSDVCAAALRGLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQQGEVLGSSPY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RKGDSNANSDVCAAALRGLSRTILMCGPLIKEETHRRLHDLVLPLVMGVQQGEVLGSSPY
570 580 590 600 610 620
580 590 600 610 620 630
pF1KB3 TSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TSSRCRRELYCLLLALLLAPSPRCPPPLACALQAFSLGQREDSLEVSSFCSEALVTCAAL
630 640 650 660 670 680
640 650 660 670 680 690
pF1KB3 THPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 THPRVPPLQPMGPTCPTPAPVPPPEAPSPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMP
690 700 710 720 730 740
700 710 720 730 740 750
pF1KB3 SAGPVPSARPGPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SAGPVPSARPGPPTTANHLGLSVPGLVSVPPRLLPGPENHRAGSNEDPILAPSGTPPPTI
750 760 770 780 790 800
760 770 780 790 800 810
pF1KB3 PPDETFGGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPDETFGGRVPRPAFVHYDKEEASDVEISLESDSDDSVVIVPEGLPPLPPPPPSGATPPP
810 820 830 840 850 860
820 830 840 850 860 870
pF1KB3 IAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IAPTGPPTASPPVPAKEEPEELPAAPGPLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGG
870 880 890 900 910 920
880 890 900 910 920 930
pF1KB3 PPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PPALEEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEE
930 940 950 960 970 980
940 950 960 970 980 990
pF1KB3 FEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPE
990 1000 1010 1020 1030 1040
1000 1010 1020 1030 1040 1050
pF1KB3 SPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQGEVEREGESPAAGPPP
1050 1060 1070 1080 1090 1100
1060 1070 1080 1090 1100 1110
pF1KB3 QELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 QELVEEEPSAPPTLLEEETEDGSDKVQPPPETPAEEEMETETEAEALQEKEQDDTAAMLA
1110 1120 1130 1140 1150 1160
1120 1130
pF1KB3 DFIDCPPDDEKPPPPTEPDS
::::::::::::::::::::
NP_055 DFIDCPPDDEKPPPPTEPDS
1170 1180
>>NP_001265170 (OMIM: 609455) proline-, glutamic acid- a (906 aa)
initn: 5545 init1: 5545 opt: 5637 Z-score: 1861.3 bits: 356.0 E(85289): 6.1e-97
Smith-Waterman score: 6017; 92.2% identity (92.2% similar) in 983 aa overlap (148-1130:1-906)
120 130 140 150 160 170
pF1KB3 ESPTELFQQHCVSWLRSIQQVLQTQDPPATMELAVAVLRDLLRYAAQLPALFRDISMNHL
::::::::::::::::::::::::::::::
NP_001 MELAVAVLRDLLRYAAQLPALFRDISMNHL
10 20 30
180 190 200 210 220 230
pF1KB3 PGLLTSLLGLRPECEQSALEGMKACMTYFPRACGSLKGKLASFFLSRVDALSPQLQQLAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGLLTSLLGLRPECEQSALEGMKACMTYFPRACGSLKGKLASFFLSRVDALSPQLQQLAC
40 50 60 70 80 90
240 250 260 270 280 290
pF1KB3 ECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYEGAETAPVQNEGPGVEML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ECYSRLPSLGAGFSQGLKHTESWEQELHSLLASLHTLLGALYEGAETAPVQNEGPGVEML
100 110 120 130 140 150
300 310 320 330 340 350
pF1KB3 LSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLSVSSKNIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSSEDGDAHVLLQLRQRFSGLARCLGLMLSSEFGAPVSVPVQEILDFICRTLSVSSKNIS
160 170 180 190 200 210
360 370 380 390 400 410
pF1KB3 LHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHGDGPLRLLLLPSIHLEALDLLSALILACGSRLLRFGILIGRLLPQVLNSWSIGRDSLS
220 230 240 250 260 270
420 430 440 450 460 470
pF1KB3 PGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISPPADALKLRS
280 290 300 310 320 330
480 490 500 510 520 530
pF1KB3 PRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILMCG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PRGSPDGSLQTGKPSAPKKLKLDVGEAMAPPSHRKGDSNANSDVCAAALRGLSRTILMCG
340 350 360 370 380 390
540 550 560 570 580 590
pF1KB3 PLIKEETHRRLHDLVLPLVMGVQQGEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLIKEETHRRLHDLVLPLVMGVQQGEVLGSSPYTSSRCRRELYCLLLALLLAPSPRCPPP
400 410 420 430 440 450
600 610 620 630 640 650
pF1KB3 LACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPLQPMGPTCPTPAPVPPPEAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LACALQAFSLGQREDSLEVSSFCSEALVTCAALTHPRVPPLQPMGPTCPTPAPVPPPEAP
460 470 480 490 500 510
660 670 680 690 700 710
pF1KB3 SPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTTANHLGLSVPGLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SPFRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSARPGPPTTANHLGLSVPGLV
520 530 540 550 560 570
720 730 740 750 760 770
pF1KB3 SVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVPPRLLPGPENHRAGSNEDPILAPSGTPPPTIPPDETFGGRVPRPAFVHYDKEEASDVE
580 590 600 610 620 630
780 790 800 810 820 830
pF1KB3 ISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ISLESDSDDSVVIVPEGLPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEELPAAPG
640 650 660 670 680 690
840 850 860 870 880 890
pF1KB3 PLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PLPPPPPPPPPVPGPVTLPPPQLVPEGTPGGGGPPALEEDLTVININSSDEEEEEEEEEE
700 710 720 730 740 750
900 910 920 930 940 950
pF1KB3 EEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEEEEEEEEEEDFEEEEEDEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEEL
760 770 780 790 800 810
960 970 980 990 1000 1010
pF1KB3 EEVEDLEFGTAGGEVEEGAPPPPTLPPALPPPESPPKVQPEPEPEPGLLLEVEEPGTEEE
::::
NP_001 EEVE--------------------------------------------------------
1020 1030 1040 1050 1060 1070
pF1KB3 RGADTAPTLAPEALPSQGEVEREGESPAAGPPPQELVEEEPSAPPTLLEEETEDGSDKVQ
:::::::::::::::::::::::::::::::::::::::
NP_001 ---------------------REGESPAAGPPPQELVEEEPSAPPTLLEEETEDGSDKVQ
820 830 840 850
1080 1090 1100 1110 1120 1130
pF1KB3 PPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEKPPPPTEPDS
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPPETPAEEEMETETEAEALQEKEQDDTAAMLADFIDCPPDDEKPPPPTEPDS
860 870 880 890 900
1130 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 12:54:22 2016 done: Thu Nov 3 12:54:25 2016
Total Scan time: 22.730 Total Display time: 0.080
Function used was FASTA [36.3.4 Apr, 2011]