Result of FASTA (omim) for
pF1KB3111
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3111, 361 aa
1>>>pF1KB3111 361 - 361 aa - 361 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.4657+/-0.000398; mu= 6.0540+/- 0.025
mean_var=125.2810+/-26.436, 0's: 0 Z-trim(115.3): 99 B-trim: 1348 in 1/55
Lambda= 0.114586
statistics sampled from 25453 (25592) to 25453 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.3), width: 16
Scan time: 8.690
The best scores are: opt bits E(85289)
NP_001122384 (OMIM: 601210) poly(rC)-binding prote ( 361) 2352 400.1 4e-111
NP_114366 (OMIM: 601210) poly(rC)-binding protein ( 362) 2340 398.1 1.6e-110
NP_001122383 (OMIM: 601210) poly(rC)-binding prote ( 365) 2334 397.1 3.2e-110
NP_005007 (OMIM: 601210) poly(rC)-binding protein ( 366) 2322 395.2 1.3e-109
NP_006187 (OMIM: 601209) poly(rC)-binding protein ( 356) 1864 319.4 7.6e-87
NP_001122386 (OMIM: 601210) poly(rC)-binding prote ( 318) 1246 217.2 3.9e-56
NP_001092090 (OMIM: 601210) poly(rC)-binding prote ( 331) 1246 217.3 4.1e-56
NP_001122385 (OMIM: 601210) poly(rC)-binding prote ( 335) 1228 214.3 3.2e-55
NP_065389 (OMIM: 608502) poly(rC)-binding protein ( 371) 1101 193.3 7.4e-49
NP_001123613 (OMIM: 608502) poly(rC)-binding prote ( 345) 932 165.4 1.8e-40
XP_016862406 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 855 152.6 1.1e-36
XP_016862407 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 855 152.6 1.1e-36
XP_016862408 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 323) 855 152.6 1.1e-36
XP_006713334 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 346) 855 152.6 1.2e-36
NP_127501 (OMIM: 608503) poly(rC)-binding protein ( 403) 855 152.7 1.4e-36
XP_006713332 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 855 152.7 1.4e-36
XP_005265388 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 855 152.7 1.4e-36
NP_001167571 (OMIM: 608503) poly(rC)-binding prote ( 403) 855 152.7 1.4e-36
XP_006713331 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 403) 855 152.7 1.4e-36
NP_127503 (OMIM: 608503) poly(rC)-binding protein ( 403) 855 152.7 1.4e-36
XP_016862405 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 855 152.7 1.4e-36
XP_005265387 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 426) 855 152.7 1.4e-36
XP_016862409 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 280) 538 100.2 6e-21
XP_006713333 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 360) 538 100.2 7.5e-21
NP_065151 (OMIM: 608503) poly(rC)-binding protein ( 360) 538 100.2 7.5e-21
XP_005265389 (OMIM: 608503) PREDICTED: poly(rC)-bi ( 383) 538 100.2 7.9e-21
XP_011516918 (OMIM: 600712,616580) PREDICTED: hete ( 439) 345 68.4 3.6e-11
NP_001305115 (OMIM: 600712,616580) heterogeneous n ( 439) 345 68.4 3.6e-11
XP_016870158 (OMIM: 600712,616580) PREDICTED: hete ( 439) 345 68.4 3.6e-11
XP_005252022 (OMIM: 600712,616580) PREDICTED: hete ( 440) 345 68.4 3.6e-11
XP_005252020 (OMIM: 600712,616580) PREDICTED: hete ( 440) 345 68.4 3.6e-11
NP_001305116 (OMIM: 600712,616580) heterogeneous n ( 440) 345 68.4 3.6e-11
XP_006713541 (OMIM: 125853,608289) PREDICTED: insu ( 300) 246 51.9 2.2e-06
XP_006713540 (OMIM: 125853,608289) PREDICTED: insu ( 343) 246 51.9 2.4e-06
NP_001153895 (OMIM: 608288) insulin-like growth fa ( 438) 230 49.4 1.9e-05
XP_016870157 (OMIM: 600712,616580) PREDICTED: hete ( 463) 224 48.4 3.9e-05
NP_001305117 (OMIM: 600712,616580) heterogeneous n ( 463) 224 48.4 3.9e-05
NP_112552 (OMIM: 600712,616580) heterogeneous nucl ( 463) 224 48.4 3.9e-05
NP_002131 (OMIM: 600712,616580) heterogeneous nucl ( 464) 224 48.4 3.9e-05
NP_112553 (OMIM: 600712,616580) heterogeneous nucl ( 464) 224 48.4 3.9e-05
XP_005252017 (OMIM: 600712,616580) PREDICTED: hete ( 464) 224 48.4 3.9e-05
XP_016870761 (OMIM: 603536) PREDICTED: far upstrea ( 377) 214 46.7 0.0001
XP_016870760 (OMIM: 603536) PREDICTED: far upstrea ( 377) 214 46.7 0.0001
XP_016870759 (OMIM: 603536) PREDICTED: far upstrea ( 377) 214 46.7 0.0001
XP_006717376 (OMIM: 603536) PREDICTED: far upstrea ( 485) 214 46.7 0.00013
XP_011517476 (OMIM: 603536) PREDICTED: far upstrea ( 485) 214 46.7 0.00013
NP_001278803 (OMIM: 125853,608289) insulin-like gr ( 493) 214 46.7 0.00013
XP_011517475 (OMIM: 603536) PREDICTED: far upstrea ( 499) 214 46.7 0.00013
NP_001007226 (OMIM: 125853,608289) insulin-like gr ( 556) 214 46.8 0.00014
XP_016861047 (OMIM: 125853,608289) PREDICTED: insu ( 562) 214 46.8 0.00015
>>NP_001122384 (OMIM: 601210) poly(rC)-binding protein 2 (361 aa)
initn: 2352 init1: 2352 opt: 2352 Z-score: 2116.0 bits: 400.1 E(85289): 4e-111
Smith-Waterman score: 2352; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
310 320 330 340 350 360
pF1KB3 S
:
NP_001 S
>>NP_114366 (OMIM: 601210) poly(rC)-binding protein 2 is (362 aa)
initn: 2338 init1: 1819 opt: 2340 Z-score: 2105.3 bits: 398.1 E(85289): 1.6e-110
Smith-Waterman score: 2340; 99.7% identity (99.7% similar) in 362 aa overlap (1-361:1-362)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
190 200 210 220 230 240
250 260 270 280 290
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCII
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_114 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCII
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
310 320 330 340 350 360
360
pF1KB3 SS
::
NP_114 SS
>>NP_001122383 (OMIM: 601210) poly(rC)-binding protein 2 (365 aa)
initn: 1288 init1: 1288 opt: 2334 Z-score: 2099.9 bits: 397.1 E(85289): 3.2e-110
Smith-Waterman score: 2334; 98.9% identity (98.9% similar) in 365 aa overlap (1-361:1-365)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIG
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETG
310 320 330 340 350 360
360
pF1KB3 GMGSS
:::::
NP_001 GMGSS
>>NP_005007 (OMIM: 601210) poly(rC)-binding protein 2 is (366 aa)
initn: 1733 init1: 1068 opt: 2322 Z-score: 2089.1 bits: 395.2 E(85289): 1.3e-109
Smith-Waterman score: 2322; 98.6% identity (98.6% similar) in 366 aa overlap (1-361:1-366)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_005 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLI
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_005 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLI
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB3 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
310 320 330 340 350 360
360
pF1KB3 GGMGSS
::::::
NP_005 GGMGSS
>>NP_006187 (OMIM: 601209) poly(rC)-binding protein 1 [H (356 aa)
initn: 1846 init1: 1017 opt: 1864 Z-score: 1680.1 bits: 319.4 E(85289): 7.6e-87
Smith-Waterman score: 1864; 81.5% identity (91.0% similar) in 367 aa overlap (1-361:1-356)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::.:: :.:::::::::::::::::::::::::::::..:::::::::::::::::::::
NP_006 MDAGVTESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
:.:::::::::::::::::::::.::::::::::::::::::::::.:::::::::::::
NP_006 LTGPTNAIFKAFAMIIDKLEEDINSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLES---PPKG--VT
::::::::::::::::::::::::::::::.:::. :::::::.::::. :.: .:
NP_006 KEIRESTGAQVQVAGDMLPNSTERAITIAGVPQSVTECVKQICLVMLETLSQSPQGRVMT
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 IPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIP
:::.: :.::::: :::::: ::.:..::.: :::::::.::.::::..:
NP_006 IPYQPMPASSPVICAGGQDRC---SDAAGYPHATH------DLEGPPLDAYSIQGQHTIS
190 200 210 220 230
240 250 260 270 280 290
pF1KB3 QPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWG-LDASAQTTSHELTIPNDL
::.::.:.: ::::: : ::.:::.::.::::::::::. ::::.::: :::::::.:
NP_006 PLDLAKLNQVARQQSHFAMMHGGTGFAGIDSSSPEVKGYWASLDASTQTT-HELTIPNNL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB3 IGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE
::::::::::.:::::::::::::::::::::. ::::::::::::::::::::.:::::
NP_006 IGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE
300 310 320 330 340 350
360
pF1KB3 TGGMGSS
: :: :
NP_006 KG-MGCS
>>NP_001122386 (OMIM: 601210) poly(rC)-binding protein 2 (318 aa)
initn: 1765 init1: 1246 opt: 1246 Z-score: 1128.7 bits: 217.2 E(85289): 3.9e-56
Smith-Waterman score: 1932; 87.8% identity (88.1% similar) in 361 aa overlap (1-361:1-318)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::: ::::::::::::::::
NP_001 KPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQPDLT
190 200
250 260 270 280 290 300
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSHELTIPNDLIGCIIG
::::::::::::::::::::::. :::::::::::::::::::::::::
NP_001 KLHQLAMQQSHFPMTHGNTGFSA------------GLDASAQTTSHELTIPNDLIGCIIG
210 220 230 240 250
310 320 330 340 350 360
pF1KB3 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGS
260 270 280 290 300 310
pF1KB3 S
:
NP_001 S
>>NP_001092090 (OMIM: 601210) poly(rC)-binding protein 2 (331 aa)
initn: 1761 init1: 1242 opt: 1246 Z-score: 1128.5 bits: 217.3 E(85289): 4.1e-56
Smith-Waterman score: 2046; 91.2% identity (91.2% similar) in 362 aa overlap (1-361:1-331)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 KPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQPDLT
::::::::::::: ::::::::::::::::
NP_001 KPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQPDLT
190 200
250 260 270 280 290
pF1KB3 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLIGCII
::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::
NP_001 KLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLIGCII
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB3 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMG
270 280 290 300 310 320
360
pF1KB3 SS
::
NP_001 SS
330
>>NP_001122385 (OMIM: 601210) poly(rC)-binding protein 2 (335 aa)
initn: 2054 init1: 1068 opt: 1228 Z-score: 1112.3 bits: 214.3 E(85289): 3.2e-55
Smith-Waterman score: 2028; 90.2% identity (90.2% similar) in 366 aa overlap (1-361:1-335)
10 20 30 40 50 60
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIIT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI
70 80 90 100 110 120
130 140 150 160 170
pF1KB3 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE----SPPKGVTI
:::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 KEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLETLSQSPPKGVTI
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB3 PYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTPSMCLNPDLEGPPLEAYTIQGQYAIPQ
::::::::::::::::: ::::::::::::
NP_001 PYRPKPSSSPVIFAGGQ-------------------------------AYTIQGQYAIPQ
190 200
240 250 260 270 280 290
pF1KB3 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYW-GLDASAQTTSHELTIPNDLI
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_001 PDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWAGLDASAQTTSHELTIPNDLI
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB3 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSET
270 280 290 300 310 320
360
pF1KB3 GGMGSS
::::::
NP_001 GGMGSS
330
>>NP_065389 (OMIM: 608502) poly(rC)-binding protein 3 is (371 aa)
initn: 1591 init1: 1099 opt: 1101 Z-score: 998.2 bits: 193.3 E(85289): 7.4e-49
Smith-Waterman score: 1609; 71.3% identity (82.9% similar) in 369 aa overlap (1-360:33-370)
10 20 30
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIG
:.. : ::::::::::::::::::::::::
NP_065 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 KKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS
::::.:::::::::::::::::::::::.:..:::.::::::::: :.:::: .::.::
NP_065 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::::::::::::: :::::::::::::::::::::::::::.::.:
NP_065 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 IPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTP
:..::.::::::::::::::::.::::::::.:.::::::::
NP_065 TPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFAGGQ-----------------
190 200 210 220
220 230 240 250 260
pF1KB3 SMCLNPDLEGPPLEAYTIQGQYAIPQPD-LTKLHQLAMQQSHFP-MTHGNTGFSGIE---
:::::::::::.:: :::::::::::. :: . . : .: : .
NP_065 --------------AYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPL
230 240 250 260 270
270 280 290 300 310 320
pF1KB3 SSSPEVKGYWG----LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN
:: :... : :::: ...::::::::::::::::::.:::::::::::::::::
NP_065 HSSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN
280 290 300 310 320 330
330 340 350 360
pF1KB3 PVEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
.:::..::.::::. :.:::::::::.::.::. :::.
NP_065 ATEGSSERQITITGTPANISLAQYLINARLTSEVTGMGTL
340 350 360 370
>>NP_001123613 (OMIM: 608502) poly(rC)-binding protein 3 (345 aa)
initn: 1428 init1: 921 opt: 932 Z-score: 847.7 bits: 165.4 E(85289): 1.8e-40
Smith-Waterman score: 1407; 65.5% identity (76.4% similar) in 368 aa overlap (1-360:33-344)
10 20 30
pF1KB3 MDTGVIEGGLNVTLTIRLLMHGKEVGSIIG
:.. : ::::::::::::::::::::::::
NP_001 EGDAFWAPSVLPHSTLSTLSHHPQPQFGRRMESKVSEGGLNVTLTIRLLMHGKEVGSIIG
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB3 KKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNS
::::.:::::::::::::::::::::::.:..:::.::::::::: :.:::: .::.::
NP_001 KKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFKAFAMIAYKFEEDIINSMSNS
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB3 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG
:.:.:::::::::::::::::::::: :::::::::::::::::::::::::::.::.:
NP_001 PATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISG
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 IPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSPVIFAGGQDRYSTGSDSASFPHTTP
:..::.:::::::::::
NP_001 TPDAIIQCVKQICVVMLE------------------------------------------
190 200
220 230 240 250 260
pF1KB3 SMCLNPDLEGPPLEAYTIQGQYAIPQPDLTKLHQLAMQQSHFP-MTHGNTGFSGIE---S
:::::::::::.:::::::::::::. :: . . : .: : .
NP_001 --------------AYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLH
210 220 230 240
270 280 290 300 310 320
pF1KB3 SSPEVKGYWG----LDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP
:: :... : :::: ...::::::::::::::::::.:::::::::::::::::
NP_001 SSEEAQNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA
250 260 270 280 290 300
330 340 350 360
pF1KB3 VEGSTDRQVTITGSAASISLAQYLINVRLSSETGGMGSS
.:::..::.::::. :.:::::::::.::.::. :::.
NP_001 TEGSSERQITITGTPANISLAQYLINARLTSEVTGMGTL
310 320 330 340
361 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 02:11:01 2016 done: Fri Nov 4 02:11:03 2016
Total Scan time: 8.690 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]