FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3105, 164 aa
  1>>>pF1KB3105 164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3497+/-0.000722; mu= 4.4045+/- 0.044
 mean_var=188.0487+/-39.147, 0's: 0 Z-trim(116.4): 98  B-trim: 1703 in 2/54
 Lambda= 0.093527
 statistics sampled from 16870 (16990) to 16870 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.522), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS4823.1 SRSF3 gene_id:6428|Hs108|chr6           ( 164) 1157 166.9 4.8e-42
CCDS56115.1 SRSF7 gene_id:6432|Hs108|chr2          ( 226)  557 86.1 1.4e-17
CCDS33183.1 SRSF7 gene_id:6432|Hs108|chr2          ( 238)  557 86.2 1.5e-17


>>CCDS4823.1 SRSF3 gene_id:6428|Hs108|chr6                (164 aa)
 initn: 1157 init1: 1157 opt: 1157  Z-score: 868.2  bits: 166.9 E(32554): 4.8e-42
Smith-Waterman score: 1157; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KB3 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 DAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRRRSPRRRS
               70        80        90       100       110       120

              130       140       150       160    
pF1KB3 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS48 FSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK
              130       140       150       160    

>>CCDS56115.1 SRSF7 gene_id:6432|Hs108|chr2               (226 aa)
 initn: 806 init1: 427 opt: 557  Z-score: 429.0  bits: 86.1 E(32554): 1.4e-17
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
CCDS56 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
CCDS56 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
CCDS56 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

CCDS56 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSPSGSPRRSASPERMD
        180       190       200       210       220      

>>CCDS33183.1 SRSF7 gene_id:6432|Hs108|chr2               (238 aa)
 initn: 769 init1: 427 opt: 557  Z-score: 428.7  bits: 86.2 E(32554): 1.5e-17
Smith-Waterman score: 557; 60.0% identity (72.7% similar) in 165 aa overlap (9-163:10-170)

                10        20        30        40        50         
pF1KB3  MHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA
                . ::::::::....: ::::::.::::::.::.::::::::::::::::::
CCDS33 MSRYGRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDA
               10        20        30        40        50        60

      60        70        80         90       100                  
pF1KB3 ADAVRELDGRTLCGCRVRVELSNG-EKRSRNRGPPPSWGRRPRDDYRR---------RSP
        :::: :::...:: :::::::.:  .:::   ::   .::: :   :          . 
CCDS33 EDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP---ARRPFDPNDRCYECGEKGHYAY
               70        80        90          100       110       

     110       120       130       140       150       160         
pF1KB3 PPRRRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHKPSRSFSRSRSRSRSNERK     
         .: : :::: :::::.: :: ::  :: :: :... ::: :  :::: : .:      
CCDS33 DCHRYSRRRRSRSRSRSHSRSRGRRYSRSRSRSRGRR-SRSASPRRSRSISLRRSRSASL
       120       130       140       150        160       170      

CCDS33 RRSRSGSIKGSRYFQSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPRRSASPER
        180       190       200       210       220       230      




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 21:16:37 2016 done: Fri Nov  4 21:16:38 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]