Result of FASTA (omim) for
pF1KB0980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0980, 450 aa
1>>>pF1KB0980 450 - 450 aa - 450 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6658+/-0.000359; mu= 2.0653+/- 0.022
mean_var=182.8825+/-38.682, 0's: 0 Z-trim(120.1): 71 B-trim: 1056 in 1/52
Lambda= 0.094839
statistics sampled from 34817 (34923) to 34817 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.409), width: 16
Scan time: 10.980
The best scores are: opt bits E(85289)
NP_003457 (OMIM: 167415,218700) paired box protein ( 450) 3045 428.9 1.4e-119
XP_011510092 (OMIM: 167415,218700) PREDICTED: pair ( 507) 3033 427.2 4.8e-119
XP_011510093 (OMIM: 167415,218700) PREDICTED: pair ( 500) 2713 383.5 7.1e-106
XP_011510096 (OMIM: 167415,218700) PREDICTED: pair ( 387) 2058 293.8 5.5e-79
NP_039246 (OMIM: 167415,218700) paired box protein ( 398) 2050 292.7 1.2e-78
XP_016860368 (OMIM: 167415,218700) PREDICTED: pair ( 402) 2050 292.7 1.2e-78
XP_011510095 (OMIM: 167415,218700) PREDICTED: pair ( 444) 2046 292.2 1.9e-78
XP_011510094 (OMIM: 167415,218700) PREDICTED: pair ( 455) 2038 291.1 4.2e-78
XP_016860367 (OMIM: 167415,218700) PREDICTED: pair ( 459) 2038 291.1 4.2e-78
NP_039247 (OMIM: 167415,218700) paired box protein ( 321) 1780 255.7 1.3e-67
NP_054698 (OMIM: 167415,218700) paired box protein ( 287) 1777 255.2 1.6e-67
NP_003980 (OMIM: 120330,167409,191830,616002) pair ( 409) 1300 190.1 9.5e-48
XP_016871775 (OMIM: 120330,167409,191830,616002) P ( 440) 1300 190.1 1e-47
NP_000269 (OMIM: 120330,167409,191830,616002) pair ( 394) 1287 188.3 3.2e-47
NP_001291498 (OMIM: 120330,167409,191830,616002) p ( 425) 1287 188.3 3.4e-47
NP_003979 (OMIM: 120330,167409,191830,616002) pair ( 396) 1277 186.9 8.2e-47
XP_016871776 (OMIM: 120330,167409,191830,616002) P ( 427) 1277 186.9 8.8e-47
XP_016871777 (OMIM: 120330,167409,191830,616002) P ( 424) 1267 185.6 2.2e-46
NP_001267476 (OMIM: 167414,615545) paired box prot ( 357) 1151 169.6 1.2e-41
NP_001267481 (OMIM: 167414,615545) paired box prot ( 328) 1141 168.3 2.8e-41
NP_001267477 (OMIM: 167414,615545) paired box prot ( 362) 1141 168.3 3.1e-41
NP_057953 (OMIM: 167414,615545) paired box protein ( 391) 1138 167.9 4.3e-41
XP_005251538 (OMIM: 167414,615545) PREDICTED: pair ( 390) 1120 165.4 2.4e-40
NP_001267478 (OMIM: 167414,615545) paired box prot ( 324) 1108 163.7 6.4e-40
XP_011516198 (OMIM: 167414,615545) PREDICTED: pair ( 410) 1098 162.4 2e-39
XP_016871770 (OMIM: 120330,167409,191830,616002) P ( 496) 1089 161.2 5.5e-39
NP_001267479 (OMIM: 167414,615545) paired box prot ( 295) 1081 160.0 7.6e-39
XP_011516199 (OMIM: 167414,615545) PREDICTED: pair ( 409) 1080 160.0 1.1e-38
NP_003978 (OMIM: 120330,167409,191830,616002) pair ( 417) 1023 152.2 2.5e-36
NP_003981 (OMIM: 120330,167409,191830,616002) pair ( 432) 1023 152.2 2.6e-36
XP_016871774 (OMIM: 120330,167409,191830,616002) P ( 448) 1023 152.2 2.6e-36
XP_016871773 (OMIM: 120330,167409,191830,616002) P ( 463) 1023 152.2 2.7e-36
XP_016871772 (OMIM: 120330,167409,191830,616002) P ( 483) 963 144.0 8.3e-34
XP_016871771 (OMIM: 120330,167409,191830,616002) P ( 483) 963 144.0 8.3e-34
NP_001267482 (OMIM: 167414,615545) paired box prot ( 319) 876 132.0 2.3e-30
NP_001267483 (OMIM: 167414,615545) paired box prot ( 348) 876 132.0 2.4e-30
XP_016871778 (OMIM: 120330,167409,191830,616002) P ( 374) 822 124.6 4.3e-28
NP_000271 (OMIM: 106210,120430,136520,148190,16555 ( 422) 791 120.4 9e-27
NP_001121084 (OMIM: 106210,120430,136520,148190,16 ( 422) 791 120.4 9e-27
NP_001245394 (OMIM: 106210,120430,136520,148190,16 ( 422) 791 120.4 9e-27
NP_001245393 (OMIM: 106210,120430,136520,148190,16 ( 422) 791 120.4 9e-27
NP_001297088 (OMIM: 106210,120430,136520,148190,16 ( 401) 775 118.2 3.9e-26
NP_001120838 (OMIM: 122880,148820,193500,268220,60 ( 483) 680 105.3 3.8e-22
NP_001244025 (OMIM: 167411,615560) paired box prot ( 457) 668 103.6 1.1e-21
NP_852122 (OMIM: 122880,148820,193500,268220,60659 ( 479) 668 103.6 1.2e-21
NP_006185 (OMIM: 167416,604625) paired box protein ( 341) 665 103.1 1.2e-21
NP_852123 (OMIM: 122880,148820,193500,268220,60659 ( 484) 668 103.6 1.2e-21
NP_852124 (OMIM: 122880,148820,193500,268220,60659 ( 505) 668 103.7 1.2e-21
NP_006183 (OMIM: 167411,615560) paired box protein ( 534) 668 103.7 1.3e-21
NP_852126 (OMIM: 122880,148820,193500,268220,60659 ( 403) 642 100.0 1.2e-20
>>NP_003457 (OMIM: 167415,218700) paired box protein Pax (450 aa)
initn: 3045 init1: 3045 opt: 3045 Z-score: 2267.9 bits: 428.9 E(85289): 1.4e-119
Smith-Waterman score: 3045; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
370 380 390 400 410 420
430 440 450
pF1KB0 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
::::::::::::::::::::::::::::::
NP_003 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
430 440 450
>>XP_011510092 (OMIM: 167415,218700) PREDICTED: paired b (507 aa)
initn: 2606 init1: 2606 opt: 3033 Z-score: 2258.3 bits: 427.2 E(85289): 4.8e-119
Smith-Waterman score: 3033; 99.8% identity (99.8% similar) in 451 aa overlap (1-450:57-507)
10 20 30
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
::::::::::::::::::::::::::::::
XP_011 QPAGQGSGRRGPDLREEAPSPRRAASDSPAMPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
30 40 50 60 70 80
40 50 60 70 80
pF1KB0 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG-RYYETGSIRPGVIGGSKPKVATPKVV
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_011 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRPGVIGGSKPKVATPKVV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB0 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB0 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB0 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB0 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
330 340 350 360 370 380
330 340 350 360 370 380
pF1KB0 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
390 400 410 420 430 440
390 400 410 420 430 440
pF1KB0 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
450 460 470 480 490 500
450
pF1KB0 L
:
XP_011 L
>>XP_011510093 (OMIM: 167415,218700) PREDICTED: paired b (500 aa)
initn: 2716 init1: 2259 opt: 2713 Z-score: 2021.8 bits: 383.5 E(85289): 7.1e-106
Smith-Waterman score: 2713; 92.0% identity (94.2% similar) in 448 aa overlap (1-444:57-499)
10 20 30
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
::::::::::::::::::::::::::::::
XP_011 QPAGQGSGRRGPDLREEAPSPRRAASDSPAMPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
30 40 50 60 70 80
40 50 60 70 80
pF1KB0 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG-RYYETGSIRPGVIGGSKPKVATPKVV
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_011 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRPGVIGGSKPKVATPKVV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB0 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB0 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB0 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB0 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
330 340 350 360 370 380
330 340 350 360 370 380
pF1KB0 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
390 400 410 420 430 440
390 400 410 420 430 440
pF1KB0 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSL---LSSPYYYSSTSRPSAPPTTATA
::::::::.: .: : : .: : ..: ...: :.::.: :: :
XP_011 AIAGMVAGKERAGRK-GSTAKRKY---WSKEVNTLAMPMATPPT-PPTARPGASPTPAC
450 460 470 480 490 500
450
pF1KB0 FDHL
>>XP_011510096 (OMIM: 167415,218700) PREDICTED: paired b (387 aa)
initn: 2032 init1: 2032 opt: 2058 Z-score: 1539.1 bits: 293.8 E(85289): 5.5e-79
Smith-Waterman score: 2498; 86.0% identity (86.0% similar) in 450 aa overlap (1-450:1-387)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVA-
250 260 270 280 290
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
XP_011 ------------------------------------------------------------
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 --GREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
300 310 320 330 340 350
430 440 450
pF1KB0 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
::::::::::::::::::::::::::::::
XP_011 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
360 370 380
>>NP_039246 (OMIM: 167415,218700) paired box protein Pax (398 aa)
initn: 2091 init1: 2040 opt: 2050 Z-score: 1533.0 bits: 292.7 E(85289): 1.2e-78
Smith-Waterman score: 2052; 82.6% identity (86.5% similar) in 385 aa overlap (1-385:1-359)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
: :: : :.:.:.: : :: .: . :. ..
NP_039 P--PFWI--------CSKSAPGSRPSM-------------PFPMLPPCT---GSSRARPS
310 320 330
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
.:.. :: : : : . ...
NP_039 SQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASP
340 350 360 370 380 390
>>XP_016860368 (OMIM: 167415,218700) PREDICTED: paired b (402 aa)
initn: 2062 init1: 2040 opt: 2050 Z-score: 1532.9 bits: 292.7 E(85289): 1.2e-78
Smith-Waterman score: 2052; 82.6% identity (86.5% similar) in 385 aa overlap (1-385:1-359)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
: :: : :.:.:.: : :: .: . :. ..
XP_016 P--PFWI--------CSKSAPGSRPSM-------------PFPMLPPCT---GSSRARPS
310 320 330
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
.:.. :: : : : . ...
XP_016 SQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQVRRGPAGRGALQRGSIGARWDTRS
340 350 360 370 380 390
>>XP_011510095 (OMIM: 167415,218700) PREDICTED: paired b (444 aa)
initn: 1593 init1: 1593 opt: 2046 Z-score: 1529.3 bits: 292.2 E(85289): 1.9e-78
Smith-Waterman score: 2486; 85.8% identity (85.8% similar) in 451 aa overlap (1-450:57-444)
10 20 30
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
::::::::::::::::::::::::::::::
XP_011 QPAGQGSGRRGPDLREEAPSPRRAASDSPAMPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
30 40 50 60 70 80
40 50 60 70 80
pF1KB0 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG-RYYETGSIRPGVIGGSKPKVATPKVV
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_011 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRPGVIGGSKPKVATPKVV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB0 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB0 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB0 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB0 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
::::::::::::::::::::::::::::::
XP_011 TLDDGKATLTPSNTPLGRNLSTHQTYPVVA------------------------------
330 340 350
330 340 350 360 370 380
pF1KB0 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
:::::::::::::::::::::::::::
XP_011 ---------------------------------GREMVGPTLPGYPPHIPTSGQGSYASS
360 370 380
390 400 410 420 430 440
pF1KB0 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
390 400 410 420 430 440
450
pF1KB0 L
:
XP_011 L
>>XP_011510094 (OMIM: 167415,218700) PREDICTED: paired b (455 aa)
initn: 2058 init1: 1601 opt: 2038 Z-score: 1523.2 bits: 291.1 E(85289): 4.2e-78
Smith-Waterman score: 2040; 82.4% identity (86.3% similar) in 386 aa overlap (1-385:57-416)
10 20 30
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
::::::::::::::::::::::::::::::
XP_011 QPAGQGSGRRGPDLREEAPSPRRAASDSPAMPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
30 40 50 60 70 80
40 50 60 70 80
pF1KB0 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG-RYYETGSIRPGVIGGSKPKVATPKVV
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_011 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRPGVIGGSKPKVATPKVV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB0 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB0 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB0 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB0 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
:::::::::::::::::::::::::::::: : :: : :.:.:.: :
XP_011 TLDDGKATLTPSNTPLGRNLSTHQTYPVVAAP--PFWI--------CSKSAPGSRPSM--
330 340 350 360 370
330 340 350 360 370 380
pF1KB0 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
:: .: . :. .. .:.. :: : : : . ...
XP_011 -----------PFPMLPPCT---GSSRARPSSQGERWWGPRCPDTHPTSPPADRAAMPPL
380 390 400 410 420
390 400 410 420 430 440
pF1KB0 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
XP_011 PSQAWWQEVNTLAMPMATPPTPPTARPGASPTPAC
430 440 450
>>XP_016860367 (OMIM: 167415,218700) PREDICTED: paired b (459 aa)
initn: 1601 init1: 1601 opt: 2038 Z-score: 1523.2 bits: 291.1 E(85289): 4.2e-78
Smith-Waterman score: 2040; 82.4% identity (86.3% similar) in 386 aa overlap (1-385:57-416)
10 20 30
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
::::::::::::::::::::::::::::::
XP_016 QPAGQGSGRRGPDLREEAPSPRRAASDSPAMPHNSIRSGHGGLNQLGGAFVNGRPLPEVV
30 40 50 60 70 80
40 50 60 70 80
pF1KB0 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILG-RYYETGSIRPGVIGGSKPKVATPKVV
::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_016 RQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGSRYYETGSIRPGVIGGSKPKVATPKVV
90 100 110 120 130 140
90 100 110 120 130 140
pF1KB0 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVA
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB0 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TKSLSPGHTLIPSSAVTPPESPQSDSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLS
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB0 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IDSQSSSSGPRKHLRTDAFSQHHLEPLECPFERQHYPEAYASPSHTKGEQGLYPLPLLNS
270 280 290 300 310 320
270 280 290 300 310 320
pF1KB0 TLDDGKATLTPSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAF
:::::::::::::::::::::::::::::: : :: : :.:.:.: :
XP_016 TLDDGKATLTPSNTPLGRNLSTHQTYPVVAAP--PFWI--------CSKSAPGSRPSM--
330 340 350 360 370
330 340 350 360 370 380
pF1KB0 LDLQQVGSGVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASS
:: .: . :. .. .:.. :: : : : . ...
XP_016 -----------PFPMLPPCT---GSSRARPSSQGERWWGPRCPDTHPTSPPADRAAMPPL
380 390 400 410 420
390 400 410 420 430 440
pF1KB0 AIAGMVAGSEYSGNAYGHTPYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDH
XP_016 PSQAWWQVRRGPAGRGALQRGSIGARWDTRSKRHTVPYS
430 440 450
>>NP_039247 (OMIM: 167415,218700) paired box protein Pax (321 aa)
initn: 1829 init1: 1778 opt: 1780 Z-score: 1334.7 bits: 255.7 E(85289): 1.3e-67
Smith-Waterman score: 1780; 85.2% identity (89.6% similar) in 317 aa overlap (1-312:1-317)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_039 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290
pF1KB0 ERQHYPEAYASPSHTKGEQGLY---P-LPLLNSTLDDG-KATLTPSNTPLGRNLSTHQTY
:::::::::::::::::::: : : . : . .:.. : . . . ..
NP_039 ERQHYPEAYASPSHTKGEQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 PVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQF
:... : : : .:
NP_039 PMATPPTPPTARPGASPTPAC
310 320
450 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:39:55 2016 done: Sat Nov 5 17:39:56 2016
Total Scan time: 10.980 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]