Result of FASTA (ccds) for
pF1KB0980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0980, 450 aa
1>>>pF1KB0980 450 - 450 aa - 450 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1217+/-0.000854; mu= 4.9983+/- 0.052
mean_var=153.9259+/-31.643, 0's: 0 Z-trim(112.3): 48 B-trim: 7 in 1/50
Lambda= 0.103376
statistics sampled from 13048 (13091) to 13048 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.402), width: 16
Scan time: 2.560
The best scores are: opt bits E(32554)
CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 ( 450) 3045 465.8 4.1e-131
CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 ( 398) 2050 317.3 1.7e-86
CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 ( 321) 1780 277.0 1.9e-74
CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 ( 287) 1777 276.5 2.4e-74
CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 ( 394) 1287 203.5 3.1e-52
CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 ( 396) 1277 202.1 8.7e-52
CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9 ( 357) 1151 183.2 3.6e-46
CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9 ( 328) 1141 181.7 9.5e-46
CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9 ( 362) 1141 181.7 1e-45
CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9 ( 391) 1138 181.3 1.5e-45
CCDS65045.1 PAX5 gene_id:5079|Hs108|chr9 ( 324) 1108 176.8 2.8e-44
CCDS65044.1 PAX5 gene_id:5079|Hs108|chr9 ( 295) 1081 172.8 4.3e-43
CCDS65042.1 PAX5 gene_id:5079|Hs108|chr9 ( 319) 876 142.2 7.3e-34
CCDS65043.1 PAX5 gene_id:5079|Hs108|chr9 ( 348) 876 142.2 7.9e-34
CCDS31451.1 PAX6 gene_id:5080|Hs108|chr11 ( 422) 791 129.6 6.1e-30
CCDS46522.1 PAX3 gene_id:5077|Hs108|chr2 ( 483) 680 113.1 6.5e-25
CCDS74709.1 PAX1 gene_id:5075|Hs108|chr20 ( 457) 668 111.3 2.2e-24
CCDS42826.1 PAX3 gene_id:5077|Hs108|chr2 ( 479) 668 111.3 2.2e-24
CCDS42825.1 PAX3 gene_id:5077|Hs108|chr2 ( 484) 668 111.3 2.3e-24
CCDS9662.1 PAX9 gene_id:5083|Hs108|chr14 ( 341) 665 110.7 2.3e-24
CCDS2448.1 PAX3 gene_id:5077|Hs108|chr2 ( 505) 668 111.3 2.3e-24
CCDS13146.2 PAX1 gene_id:5075|Hs108|chr20 ( 534) 668 111.3 2.5e-24
CCDS2450.1 PAX3 gene_id:5077|Hs108|chr2 ( 403) 642 107.4 2.9e-23
CCDS2449.1 PAX3 gene_id:5077|Hs108|chr2 ( 407) 642 107.4 2.9e-23
CCDS2451.1 PAX3 gene_id:5077|Hs108|chr2 ( 206) 636 106.3 3e-23
CCDS46523.1 PAX3 gene_id:5077|Hs108|chr2 ( 215) 636 106.3 3.1e-23
CCDS44075.1 PAX7 gene_id:5081|Hs108|chr1 ( 518) 635 106.4 7.3e-23
CCDS44074.1 PAX7 gene_id:5081|Hs108|chr1 ( 505) 627 105.2 1.6e-22
CCDS186.1 PAX7 gene_id:5081|Hs108|chr1 ( 520) 627 105.2 1.7e-22
CCDS5797.1 PAX4 gene_id:5078|Hs108|chr7 ( 343) 558 94.8 1.5e-19
CCDS31452.1 PAX6 gene_id:5080|Hs108|chr11 ( 436) 558 94.8 1.8e-19
CCDS65039.1 PAX5 gene_id:5079|Hs108|chr9 ( 220) 529 90.4 2e-18
CCDS65040.1 PAX5 gene_id:5079|Hs108|chr9 ( 283) 415 73.4 3.3e-13
CCDS65041.1 PAX5 gene_id:5079|Hs108|chr9 ( 291) 391 69.8 4e-12
>>CCDS46398.1 PAX8 gene_id:7849|Hs108|chr2 (450 aa)
initn: 3045 init1: 3045 opt: 3045 Z-score: 2467.4 bits: 465.8 E(32554): 4.1e-131
Smith-Waterman score: 3045; 100.0% identity (100.0% similar) in 450 aa overlap (1-450:1-450)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
370 380 390 400 410 420
430 440 450
pF1KB0 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
::::::::::::::::::::::::::::::
CCDS46 NSSLLSSPYYYSSTSRPSAPPTTATAFDHL
430 440 450
>>CCDS46399.1 PAX8 gene_id:7849|Hs108|chr2 (398 aa)
initn: 2091 init1: 2040 opt: 2050 Z-score: 1666.2 bits: 317.3 E(32554): 1.7e-86
Smith-Waterman score: 2052; 82.6% identity (86.5% similar) in 385 aa overlap (1-385:1-359)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAA
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
: :: : :.:.:.: : :: .: . :. ..
CCDS46 P--PFWI--------CSKSAPGSRPSM-------------PFPMLPPCT---GSSRARPS
310 320 330
370 380 390 400 410 420
pF1KB0 LSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYSSYSEAWRFP
.:.. :: : : : . ...
CCDS46 SQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAMPMATPPTPPTARPGASP
340 350 360 370 380 390
>>CCDS42736.1 PAX8 gene_id:7849|Hs108|chr2 (321 aa)
initn: 1829 init1: 1778 opt: 1780 Z-score: 1450.0 bits: 277.0 E(32554): 1.9e-74
Smith-Waterman score: 1780; 85.2% identity (89.6% similar) in 317 aa overlap (1-312:1-317)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290
pF1KB0 ERQHYPEAYASPSHTKGEQGLY---P-LPLLNSTLDDG-KATLTPSNTPLGRNLSTHQTY
:::::::::::::::::::: : : . : . .:.. : . . . ..
CCDS42 ERQHYPEAYASPSHTKGEQGERWWGPRCPDTHPTSPPADRAAMPPLPSQAWWQEVNTLAM
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 PVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQF
:... : : : .:
CCDS42 PMATPPTPPTARPGASPTPAC
310 320
>>CCDS42735.1 PAX8 gene_id:7849|Hs108|chr2 (287 aa)
initn: 1796 init1: 1770 opt: 1777 Z-score: 1448.3 bits: 276.5 E(32554): 2.4e-74
Smith-Waterman score: 1777; 93.0% identity (94.7% similar) in 284 aa overlap (1-284:1-283)
10 20 30 40 50 60
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 ILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 TVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQSDSLGSTY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHLEPLECPF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 ERQHYPEAYASPSHTKGEQGLYPLPLLNSTLDDGKATLTPSNTPLGRNLSTHQTYPVVAD
::::::::::::::::::: . : . .: : :. .:
CCDS42 ERQHYPEAYASPSHTKGEQEVNTLAMPMAT-PPTPPTARPGASPTPAC
250 260 270 280
310 320 330 340 350 360
pF1KB0 PHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASVYGQFTGQAL
>>CCDS41561.1 PAX2 gene_id:5076|Hs108|chr10 (394 aa)
initn: 1509 init1: 870 opt: 1287 Z-score: 1051.3 bits: 203.5 E(32554): 3.1e-52
Smith-Waterman score: 1543; 55.5% identity (72.8% similar) in 449 aa overlap (2-448:9-392)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV
: .... ::::.:::::.::::::::.:::::::.:::::::::::::::::
CCDS41 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA
::::::::::::::::::.:::::::::::::::::.::..:::::::::::::::::::
CCDS41 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 EGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQS
::.::::::::::::::::::::::::. : . ..: .::::..::.: : : ..
CCDS41 EGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASN
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 DSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHL
: .:: :::::.::: . ...::: :.. ... . ::::. .. :::::.:.:.:..:
CCDS41 DPVGS-YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 EPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLST
: :. ::: ::... . : :.::: : :: :. ::. :..:. :..: :: :.:
CCDS41 EALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 HQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASV
::::::
CCDS41 TQTYPVV-----------------------------------------------------
300
360 370 380 390 400 410
pF1KB0 YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHTPYS
.::.:.. ::::::::.: .::::: .:..:::: :::.::: :.: :.
CCDS41 ----------TGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFSGNPYSHPQYT
310 320 330 340 350
420 430 440 450
pF1KB0 SYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
.:.::::: : .:::::::::.. : ::: ..:.:.:
CCDS41 AYNEAWRFSNPALLSSPYYYSAAPRGSAPAAAAAAYDRH
360 370 380 390
>>CCDS7499.1 PAX2 gene_id:5076|Hs108|chr10 (396 aa)
initn: 1308 init1: 870 opt: 1277 Z-score: 1043.2 bits: 202.1 E(32554): 8.7e-52
Smith-Waterman score: 1330; 51.2% identity (69.0% similar) in 445 aa overlap (2-443:9-386)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV
: .... ::::.:::::.::::::::.:::::::.:::::::::::::::::
CCDS74 MDMHCKADPFSAMHPGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 SHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLA
::::::::::::::::::.:::::::::::::::::.::..:::::::::::::::::::
CCDS74 SHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVDKIAEYKRQNPTMFAWEIRDRLLA
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 EGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQS
::.::::::::::::::::::::::::. : . ..: .::::..::.: : : ..
CCDS74 EGICDNDTVPSVSSINRIIRTKVQQPFH-PTPDGAGTGVTAPGHTIVPSTASPPVSSASN
130 140 150 160 170
180 190 200 210 220 230
pF1KB0 DSLGSTYSINGLLGIAQPGSDKRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQHHL
: .:: :::::.::: . ...::: :.. ... . ::::. .. :::::.:.:.:..:
CCDS74 DPVGS-YSINGILGIPRSNGEKRKRDEDVSEGSVPNGDSQSGVDSLRKHLRADTFTQQQL
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 EPLECPFERQHYPEAYASPSHTKGEQG-LYPLPLLNSTLDDGKATLTPSNTP-LGRNLST
: :. ::: ::... . : :.::: : :: :. ::. :..:. :..: :: :.:
CCDS74 EALDRVFERPSYPDVFQASEHIKSEQGNEYSLPALTPGLDEVKSSLSASTNPELGSNVSG
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 HQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHAASV
::::::
CCDS74 TQTYPVV-----------------------------------------------------
300
360 370 380 390 400 410
pF1KB0 YGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYS-GNAYGHTPY
.::.:.. ::::::::.: .::::: .:..:::: . . ... :
CCDS74 ----------TGRDMASTTLPGYPPHVPPTGQGSYPTSTLAGMVPEAAVGPSSSLMSKPG
310 320 330 340 350
420 430 440 450
pF1KB0 SSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
. .:. . . ::: . :. ::. :::
CCDS74 RKLAEVPPCVQPTGASSPA--TRTATPSTRPTTRLGDSATPPY
360 370 380 390
>>CCDS65047.1 PAX5 gene_id:5079|Hs108|chr9 (357 aa)
initn: 1216 init1: 864 opt: 1151 Z-score: 942.3 bits: 183.2 E(32554): 3.6e-46
Smith-Waterman score: 1191; 49.4% identity (64.5% similar) in 451 aa overlap (2-448:10-355)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
:..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
:::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
:: :::::::::::::::::::::::: : :. . .:... ...:: : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
.:: ::.:::.:.:::..:..: ::: :.. :.: . : . . ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
..:: :. :::::: . ... : :: . : . ::: ::.:. : ::
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
240 250 260 270 280
290 300 310 320 330 340
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
:: .::.::
CCDS65 ----------AD----------------------------------IGSSVP--------
290
350 360 370 380 390 400
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
:: .:: .:.:::.::. :.:
CCDS65 -------------------GPQ--SYP------------------IVTGSEFSGSPYSHP
300 310
410 420 430 440 450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
::::...::::: .::.::::::...: .:::..:::.:
CCDS65 QYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
320 330 340 350
>>CCDS65046.1 PAX5 gene_id:5079|Hs108|chr9 (328 aa)
initn: 1069 init1: 855 opt: 1141 Z-score: 934.8 bits: 181.7 E(32554): 9.5e-46
Smith-Waterman score: 1141; 59.9% identity (78.3% similar) in 309 aa overlap (2-305:10-307)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
:..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
:::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
:: :::::::::::::::::::::::: : :. . .:... ...:: : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVP--------ASSHSIVSTGSVTQVSSVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
.:: ::.:::.:.:::..:..: ::: :.. :.: . : . . ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATL-TPSNTPLGR
..:: :. :::::: . ... : :: . : . ::: ::.: .:. . .:
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLASPTPADIGS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB0 NLSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPH
.. :.::.:. ::.
CCDS65 SVPGPQSYPIVTG--SPYYYSAAARGAAPPAAATAYDRH
300 310 320
>>CCDS65048.1 PAX5 gene_id:5079|Hs108|chr9 (362 aa)
initn: 1241 init1: 864 opt: 1141 Z-score: 934.2 bits: 181.7 E(32554): 1e-45
Smith-Waterman score: 1210; 49.0% identity (65.4% similar) in 451 aa overlap (2-448:10-360)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
:..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS65 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
:::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS65 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
:: :::::::::::::::::::::::: : :. . .:... ...:: : .
CCDS65 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
.:: ::.:::.:.:::..:..: ::: :.. :.: . : . . ::..: : :.:
CCDS65 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
..:: :. :::::: . ... : :: . : . ::: ::.:. : ::
CCDS65 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
240 250 260 270 280
290 300 310 320 330 340
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
:: .::.:: ...:
CCDS65 ----------AD----------------------------------IGSSVPGPQSYP--
290 300
350 360 370 380 390 400
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
...::.... ::::::::.: .:::::.. ...::: ::
CCDS65 -----------IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGS----------
310 320 330
410 420 430 440 450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
:::::...: .:::..:::.:
CCDS65 -------------------PYYYSAAARGAAPPAAATAYDRH
340 350 360
>>CCDS6607.1 PAX5 gene_id:5079|Hs108|chr9 (391 aa)
initn: 1373 init1: 864 opt: 1138 Z-score: 931.2 bits: 181.3 E(32554): 1.5e-45
Smith-Waterman score: 1408; 52.8% identity (71.0% similar) in 451 aa overlap (2-448:10-389)
10 20 30 40 50
pF1KB0 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLR
:..: :.::::.:::::.::::::::.:::::::.::::::::::::::::
CCDS66 MDLEKNYPTPRTS-RTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLR
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 VSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLL
:::::::::::::::::::.::::::::::::::::::::..::::::::::::::::::
CCDS66 VSHGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 AEGVCDNDTVPSVSSINRIIRTKVQQPFNLPMDSCVATKSLSPGHTLIPSSAVTPPESPQ
:: :::::::::::::::::::::::: : :. . .:... ...:: : .
CCDS66 AERVCDNDTVPSVSSINRIIRTKVQQPPNQPVPA--------SSHSIVSTGSVTQVSSVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 SDSLGSTYSINGLLGIAQPGSD--KRKMDDSDQDSCRLSIDSQSSSSGPRKHLRTDAFSQ
.:: ::.:::.:.:::..:..: ::: :.. :.: . : . . ::..: : :.:
CCDS66 TDSAGSSYSISGILGITSPSADTNKRKRDEGIQESPVPNGHSLPGRDFLRKQMRGDLFTQ
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 HHLEPLECPFERQHYPEAYASPSHTKGEQGLY--PLPLLNSTLDDGKATLTPSNTPLGRN
..:: :. :::::: . ... : :: . : . ::: ::.:. : ::
CCDS66 QQLEVLDRVFERQHYSDIFTTTEPIKPEQTTEYSAMASLAGGLDDMKANLA-SPTP----
240 250 260 270 280
290 300 310 320 330 340
pF1KB0 LSTHQTYPVVADPHSPFAIKQETPEVSSSSSTPSSLSSSAFLDLQQVGSGVPPFNAFPHA
:: .::.:: ...:
CCDS66 ----------AD----------------------------------IGSSVPGPQSYP--
290 300
350 360 370 380 390 400
pF1KB0 ASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYASSAIAGMVAGSEYSGNAYGHT
...::.... ::::::::.: .:::::.. ...::: :::.::. :.:
CCDS66 -----------IVTGRDLASTTLPGYPPHVPPAGQGSYSAPTLTGMVPGSEFSGSPYSHP
310 320 330 340
410 420 430 440 450
pF1KB0 PYSSYSEAWRFPNSSLLSSPYYYSSTSRPSAPPTTATAFDHL
::::...::::: .::.::::::...: .:::..:::.:
CCDS66 QYSSYNDSWRFPNPGLLGSPYYYSAAARGAAPPAAATAYDRH
350 360 370 380 390
450 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:39:54 2016 done: Sat Nov 5 17:39:54 2016
Total Scan time: 2.560 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]