FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0974, 437 aa
  1>>>pF1KB0974 437 - 437 aa - 437 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7464+/-0.000727; mu= 16.6522+/- 0.044
 mean_var=95.0934+/-18.369, 0's: 0 Z-trim(112.2): 23  B-trim: 14 in 1/51
 Lambda= 0.131522
 statistics sampled from 12980 (13001) to 12980 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.399), width:  16
 Scan time:  2.660

The best scores are:                                      opt bits E(32554)
CCDS62700.1 CD177 gene_id:57126|Hs108|chr19        ( 437) 3056 589.8 1.8e-168
CCDS59393.1 TEX101 gene_id:83639|Hs108|chr19       ( 249)  430 91.3 1.2e-18
CCDS12619.1 TEX101 gene_id:83639|Hs108|chr19       ( 267)  430 91.3 1.2e-18
CCDS12587.1 LYPD4 gene_id:147719|Hs108|chr19       ( 246)  344 75.0 9.4e-14


>>CCDS62700.1 CD177 gene_id:57126|Hs108|chr19             (437 aa)
 initn: 3056 init1: 3056 opt: 3056  Z-score: 3138.1  bits: 589.8 E(32554): 1.8e-168
Smith-Waterman score: 3056; 99.1% identity (99.5% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KB0 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWTPKNTSCDSGLGCQDTLM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLVNSLPLW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 APQPPADPGSLRCPVCLSMEGCLEGTTEEICPKGTTHCYDGLLRLRGGGIFSNLRVQGCM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 PQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
       ::: :::::::::::::::::::. :::::::::::::::::::::::::::::::::::
CCDS62 PQPVCNLLNGTQEIGPVGMTENCDMKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMCEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 GQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
       ::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GQVCQETLLLLDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDLCN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHLSG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 GGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSAREKRDVQPPASQHEGGGAEGLESLTWGV
              370       380       390       400       410       420

              430       
pF1KB0 GLALAPALWWGVVCPSC
       :::::::::::::::::
CCDS62 GLALAPALWWGVVCPSC
              430       

>>CCDS59393.1 TEX101 gene_id:83639|Hs108|chr19            (249 aa)
 initn: 411 init1: 199 opt: 430  Z-score: 448.5  bits: 91.3 E(32554): 1.2e-18
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:26-241)

      180       190       200       210       220       230        
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
                                     : :..: .. .... :.   .::: ..: :
CCDS59      MGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
                    10        20        30        40         50    

      240       250       260       270       280       290        
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       . : .::::.:.: .:  .....::::   : ...   . ::.:::..:.::...: ...
CCDS59 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
           60        70        80         90       100       110   

      300       310       320       330       340       350        
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
       ::. .: : . .     :. :    .:::::  :::: : .: . :: :.:.::.: ...
CCDS59 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
           120       130       140        150        160       170 

      360       370       380       390           400       410    
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
       .:::. ... ..::.:. .  :..    .: . .::    .  .::  ...   ::  : 
CCDS59 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
             180       190       200       210       220           

          420       430       
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
         .::. : : : :         
CCDS59 IPVWGLQLLL-PLLLPSFIHFS 
      230        240          

>>CCDS12619.1 TEX101 gene_id:83639|Hs108|chr19            (267 aa)
 initn: 411 init1: 199 opt: 430  Z-score: 448.1  bits: 91.3 E(32554): 1.2e-18
Smith-Waterman score: 464; 33.9% identity (66.1% similar) in 224 aa overlap (209-428:44-259)

      180       190       200       210       220       230        
pF1KB0 CMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEPTDWTTSNTEMC
                                     : :..: .. .... :.   .::: ..: :
CCDS12 SPEEAMGTPRIQHLLILLVLGASLLTSGLELYCQKGLSMTVEADPANM-FNWTTEEVETC
            20        30        40        50        60         70  

      240       250       260       270       280       290        
pF1KB0 EVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLVASYTHFCSSDL
       . : .::::.:.: .:  .....::::   : ...   . ::.:::..:.::...: ...
CCDS12 DKGALCQETILIIKAGTETAILATKGCIPEG-EEAITIVQHSSPPGLIVTSYSNYCEDSF
             80        90       100        110       120       130 

      300       310       320       330       340       350        
pF1KB0 CNSASSSSVLLNSLPPQAAPVPGDRQCPTCVQPLGTCSSGSPRMTCPRGATHCYDGYIHL
       ::. .: : . .     :. :    .:::::  :::: : .: . :: :.:.::.: ...
CCDS12 CNDKDSLSQFWEFSETTASTVSTTLHCPTCVA-LGTCFS-APSLPCPNGTTRCYQGKLEI
             140       150       160         170       180         

      360       370       380       390           400       410    
pF1KB0 SGGGLSTKMSIQGCVAQPSSFLLNHTRQIGIFSARE----KRDVQPPASQHEGGGAEGLE
       .:::. ... ..::.:. .  :..    .: . .::    .  .::  ...   ::  : 
CCDS12 TGGGIESSVEVKGCTAMIGCRLMSGILAVGPMFVREACPHQLLTQPRKTEN---GATCLP
     190       200       210       220       230       240         

          420       430       
pF1KB0 SLTWGVGLALAPALWWGVVCPSC
         .::. : : : :         
CCDS12 IPVWGLQLLL-PLLLPSFIHFS 
        250        260        

>>CCDS12587.1 LYPD4 gene_id:147719|Hs108|chr19            (246 aa)
 initn: 341 init1: 135 opt: 344  Z-score: 360.4  bits: 75.0 E(32554): 9.4e-14
Smith-Waterman score: 344; 32.5% identity (61.2% similar) in 209 aa overlap (4-204:9-215)

                    10        20        30        40         50    
pF1KB0      MSAVLLLALLGFILPLPGVQALLCQFGTVQHVWKVSDLPRQWT-PKNTSCDSGLG
               : :. ::: :  :: . ::::  .:...   :.    .:   .:  :    :
CCDS12 MGPQHLRLVQLFCLLGAISTLPRAGALLCYEATASRFRAVAFHNWKWLLMRNMVCKLQEG
               10        20        30        40        50        60

           60        70        80        90       100       110    
pF1KB0 CQDTLMLIESGPQVSLVLSKGCTEAKDQEPRVTEHRMGPGLSLISYTFVCRQEDFCNNLV
       :..::..::.:   ..:  :::. ...   ...     ::.:. ::. :::.  .::::.
CCDS12 CEETLVFIETGTARGVVGFKGCSSSSSYPAQISYLVSPPGVSIASYSRVCRSY-LCNNLT
               70        80        90       100       110          

             120        130         140        150       160       
pF1KB0 NSLP---LWAPQPPA-DPGSLRCPVCLS--MEGCLEG-TTEEICPKGTTHCYDGLLRLRG
       :  :   : :  : .   .:  ::.:..  :. :: . .: . :: ... ::.. :....
CCDS12 NLEPFVKLKASTPKSITSASCSCPTCVGEHMKDCLPNFVTTNSCPLAASTCYSSTLKFQA
     120       130       140       150       160       170         

       170       180       190       200       210       220       
pF1KB0 GGIFSNLRVQGCMPQPGCNLLNGTQEIGPVGMTENCNRKDFLTCHRGTTIMTHGNLAQEP
       : . ... ..::  . . .::   ..:: . .::  :                       
CCDS12 GFLNTTFLLMGCAREHN-QLLADFHHIGSIKVTEVLNILEKSQIVGAASSRQDPAWGVVL
     180       190        200       210       220       230        

       230       240       250       260       270       280       
pF1KB0 TDWTTSNTEMCEVGQVCQETLLLIDVGLTSTLVGTKGCSTVGAQNSQKTTIHSAPPGVLV
                                                                   
CCDS12 GLLFAFRD                                                    
      240                                                          




437 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:36:27 2016 done: Sat Nov  5 17:36:27 2016
 Total Scan time:  2.660 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]