FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0960, 425 aa
  1>>>pF1KB0960 425 - 425 aa - 425 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.3255+/-0.000997; mu= 1.1908+/- 0.060
 mean_var=259.5235+/-50.691, 0's: 0 Z-trim(113.1): 50  B-trim: 0 in 0/52
 Lambda= 0.079613
 statistics sampled from 13720 (13753) to 13720 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.422), width:  16
 Scan time:  3.390

The best scores are:                                      opt bits E(32554)
CCDS45663.1 CWC25 gene_id:54883|Hs108|chr17        ( 425) 2783 332.6 4.5e-91


>>CCDS45663.1 CWC25 gene_id:54883|Hs108|chr17             (425 aa)
 initn: 2783 init1: 2783 opt: 2783  Z-score: 1748.5  bits: 332.6 E(32554): 4.5e-91
Smith-Waterman score: 2783; 100.0% identity (100.0% similar) in 425 aa overlap (1-425:1-425)

               10        20        30        40        50        60
pF1KB0 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MGGGDLNLKKSWHPQTLRNVEKVWKAEQKHEAERKKIEELQRELREERAREEMQRYAEDV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GAVKKKEEKLDWMYQGPGGMVNRDEYLLGRPIDKYVFEKMEEKEAGCSSETGLLPGSIFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PSGANSLLDMASKIREDPLFIIRKKEEEKKREVLNNPVKMKKIKELLQMSLEKKEKKKKK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 EKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EKKKKHKKHKHRSSSSDRSSSEDEHSAGRSQKKMANSSPVLSKVPGYGLQVRNSDRNQGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 QGPLTAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTREAGSRDRRSRSLGRRSRSPRPSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QGPLTAEQKRGHGMKNHSRSRSSSHSPPRHASKKSTREAGSRDRRSRSLGRRSRSPRPSK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LHNSKVNRRETGQTRSPSPKKEVYQRRHAPGYTRKLSAEELERKRQEMMENAKWREEERL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LHNSKVNRRETGQTRSPSPKKEVYQRRHAPGYTRKLSAEELERKRQEMMENAKWREEERL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 NILKRHAKDEEREQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NILKRHAKDEEREQRLEKLDSRDGKFIHRMKLESASTSSLEDRVKRNIYSLQRTSVALEK
              370       380       390       400       410       420

            
pF1KB0 NFMKR
       :::::
CCDS45 NFMKR
            




425 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 20:39:25 2016 done: Sat Nov  5 20:39:25 2016
 Total Scan time:  3.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]