FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0958, 420 aa
  1>>>pF1KB0958 420 - 420 aa - 420 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8016+/-0.00091; mu= 14.7054+/- 0.055
 mean_var=71.0322+/-13.691, 0's: 0 Z-trim(105.8): 9  B-trim: 0 in 0/49
 Lambda= 0.152176
 statistics sampled from 8619 (8620) to 8619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.626), E-opt: 0.2 (0.265), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS44926.1 PRIM1 gene_id:5557|Hs108|chr12         ( 420) 2860 637.2 9.1e-183


>>CCDS44926.1 PRIM1 gene_id:5557|Hs108|chr12              (420 aa)
 initn: 2860 init1: 2860 opt: 2860  Z-score: 3394.8  bits: 637.2 E(32554): 9.1e-183
Smith-Waterman score: 2860; 100.0% identity (100.0% similar) in 420 aa overlap (1-420:1-420)

               10        20        30        40        50        60
pF1KB0 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 METFDPTELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VRSGIVEYLSLVKGGQDVKKKVHLSEKIHPFIRKSINIIKKYFEEYALVNQDILENKESW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 DKILALVPETIHDELQQSFQKSHNSLQRWEHLKKVASRYQNNIKNDKYGPWLEWEIMLQY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 CFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGELLKKSDLQKDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 STNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGELLKKSDLQKDF
              370       380       390       400       410       420




420 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 08:08:11 2016 done: Sat Nov  5 08:08:12 2016
 Total Scan time:  2.840 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]