FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0937, 160 aa
  1>>>pF1KB0937 160 - 160 aa - 160 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3212+/-0.000704; mu= 9.2734+/- 0.043
 mean_var=106.4904+/-21.024, 0's: 0 Z-trim(113.4): 69  B-trim: 0 in 0/51
 Lambda= 0.124285
 statistics sampled from 13966 (14037) to 13966 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.778), E-opt: 0.2 (0.431), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS46558.1 TWIST2 gene_id:117581|Hs108|chr2       ( 160) 1038 195.4 1.3e-50
CCDS5367.1 TWIST1 gene_id:7291|Hs108|chr7          ( 202)  655 126.8 7.1e-30


>>CCDS46558.1 TWIST2 gene_id:117581|Hs108|chr2            (160 aa)
 initn: 1038 init1: 1038 opt: 1038  Z-score: 1022.4  bits: 195.4 E(32554): 1.3e-50
Smith-Waterman score: 1038; 100.0% identity (100.0% similar) in 160 aa overlap (1-160:1-160)

               10        20        30        40        50        60
pF1KB0 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MEEGSSSPVSPVDSLGTSEEELERQPKRFGRKRRYSKKSSEDGSPTPGKRGKKGSPSAQS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 FEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQV
               70        80        90       100       110       120

              130       140       150       160
pF1KB0 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
       ::::::::::::::::::::::::::::::::::::::::
CCDS46 LQSDEMDNKMTSCSYVAHERLSYAFSVWRMEGAWSMSASH
              130       140       150       160

>>CCDS5367.1 TWIST1 gene_id:7291|Hs108|chr7               (202 aa)
 initn: 794 init1: 640 opt: 655  Z-score: 649.8  bits: 126.8 E(32554): 7.1e-30
Smith-Waterman score: 713; 66.7% identity (75.0% similar) in 192 aa overlap (10-160:11-202)

                10         20            30        40              
pF1KB0  MEEGSSSPVSPVD-SLGTSEEELERQ-P---KRFGRKRRYSKKSS--------------
                 ::.: ::..:::: .:: :   :: ::::: :..:.              
CCDS53 MMQDVSSSPVSPADDSLSNSEEEPDRQQPPSGKRGGRKRRSSRRSAGGGAGPGGAAGGGV
               10        20        30        40        50        60

                   50                          60        70        
pF1KB0 ----EDGSPTPGKRGKK------------------GSPSAQSFEELQSQRILANVRERQR
           : :::. ::::::                  :. : ::.::::.::..::::::::
CCDS53 GGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVMANVRERQR
               70        80        90       100       110       120

       80        90       100       110       120       130        
pF1KB0 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDEMDNKMTSCSYVAH
       :::::::::::::::::::::::::::::::::::::::::::::::.:.::.:::::::
CCDS53 TQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQSDELDSKMASCSYVAH
              130       140       150       160       170       180

      140       150       160
pF1KB0 ERLSYAFSVWRMEGAWSMSASH
       ::::::::::::::::::::::
CCDS53 ERLSYAFSVWRMEGAWSMSASH
              190       200  




160 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:20:49 2016 done: Sat Nov  5 17:20:50 2016
 Total Scan time:  2.060 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]