Result of FASTA (ccds) for
pF1KB0931
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0931, 145 aa
1>>>pF1KB0931 145 - 145 aa - 145 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1610+/-0.000831; mu= 12.4075+/- 0.050
mean_var=83.7801+/-16.864, 0's: 0 Z-trim(108.1): 163 B-trim: 49 in 1/49
Lambda= 0.140121
statistics sampled from 9807 (10013) to 9807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.308), width: 16
Scan time: 1.510
The best scores are: opt bits E(32554)
CCDS9803.1 SYNJ2BP gene_id:55333|Hs108|chr14 ( 145) 958 202.9 5.9e-53
CCDS73648.1 COX16 gene_id:100529257|Hs108|chr14 ( 182) 663 143.3 6.2e-35
CCDS56300.1 DLG1 gene_id:1739|Hs108|chr3 ( 788) 283 67.1 2.4e-11
CCDS56301.1 DLG1 gene_id:1739|Hs108|chr3 ( 800) 283 67.1 2.4e-11
CCDS45600.1 DLG4 gene_id:1742|Hs108|chr17 ( 721) 282 66.8 2.6e-11
CCDS82050.1 DLG4 gene_id:1742|Hs108|chr17 ( 724) 282 66.8 2.6e-11
CCDS75072.1 DLG1 gene_id:1739|Hs108|chr3 ( 892) 283 67.1 2.6e-11
CCDS43194.1 DLG1 gene_id:1739|Hs108|chr3 ( 904) 283 67.1 2.6e-11
CCDS3327.1 DLG1 gene_id:1739|Hs108|chr3 ( 926) 283 67.1 2.7e-11
CCDS45599.1 DLG4 gene_id:1742|Hs108|chr17 ( 767) 282 66.9 2.7e-11
CCDS44691.1 DLG2 gene_id:1740|Hs108|chr11 ( 749) 274 65.2 8.1e-11
CCDS73357.1 DLG2 gene_id:1740|Hs108|chr11 ( 852) 274 65.3 8.9e-11
CCDS41696.1 DLG2 gene_id:1740|Hs108|chr11 ( 870) 274 65.3 9.1e-11
CCDS55782.1 DLG2 gene_id:1740|Hs108|chr11 ( 909) 274 65.3 9.3e-11
CCDS44690.1 DLG2 gene_id:1740|Hs108|chr11 ( 975) 274 65.3 9.8e-11
>>CCDS9803.1 SYNJ2BP gene_id:55333|Hs108|chr14 (145 aa)
initn: 958 init1: 958 opt: 958 Z-score: 1064.2 bits: 202.9 E(32554): 5.9e-53
Smith-Waterman score: 958; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB0 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPI
70 80 90 100 110 120
130 140
pF1KB0 FMVLVPVFALTMVAAWAFMRYRQQL
:::::::::::::::::::::::::
CCDS98 FMVLVPVFALTMVAAWAFMRYRQQL
130 140
>>CCDS73648.1 COX16 gene_id:100529257|Hs108|chr14 (182 aa)
initn: 677 init1: 663 opt: 663 Z-score: 740.6 bits: 143.3 E(32554): 6.2e-35
Smith-Waterman score: 663; 93.6% identity (96.4% similar) in 110 aa overlap (1-110:1-110)
10 20 30 40 50 60
pF1KB0 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQVQNGPIGHRGEGDPSGIPI
:::::::::::::::::::::::::::::::::::::::: . .: .: :
CCDS73 EGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLLIVGGSFGLREFSQIRYDAV
70 80 90 100 110 120
130 140
pF1KB0 FMVLVPVFALTMVAAWAFMRYRQQL
CCDS73 KSKMDPELEKKLKENKISLESEYEKIKDSKFDDWKNIRGPRPWEDPDLLQGRNPESLKTK
130 140 150 160 170 180
>>CCDS56300.1 DLG1 gene_id:1739|Hs108|chr3 (788 aa)
initn: 432 init1: 279 opt: 283 Z-score: 317.2 bits: 67.1 E(32554): 2.4e-11
Smith-Waterman score: 283; 42.0% identity (71.4% similar) in 119 aa overlap (1-118:97-213)
10 20
pF1KB0 MNGR-VDYLVTEEEINLTRGPSGLGFNIVG
.:: .:: :::.: :: :::::.:.:
CCDS56 IDCISVATSSTQANPPPVLVNTDSLETPTYVNGTDADY--EYEEITLERGNSGLGFSIAG
70 80 90 100 110 120
30 40 50 60 70 80
pF1KB0 GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG
:::. ....::.:....: .:::: ::::. .: :: :: :.... :. ::. ...::
CCDS56 GTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG
130 140 150 160 170 180
90 100 110 120 130 140
pF1KB0 YAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
: : :..: :.. . . :.:.
CCDS56 SIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAH
190 200 210 220 230 240
>>CCDS56301.1 DLG1 gene_id:1739|Hs108|chr3 (800 aa)
initn: 432 init1: 279 opt: 283 Z-score: 317.1 bits: 67.1 E(32554): 2.4e-11
Smith-Waterman score: 283; 42.0% identity (71.4% similar) in 119 aa overlap (1-118:97-213)
10 20
pF1KB0 MNGR-VDYLVTEEEINLTRGPSGLGFNIVG
.:: .:: :::.: :: :::::.:.:
CCDS56 IDCISVATSSTQANPPPVLVNTDSLETPTYVNGTDADY--EYEEITLERGNSGLGFSIAG
70 80 90 100 110 120
30 40 50 60 70 80
pF1KB0 GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG
:::. ....::.:....: .:::: ::::. .: :: :: :.... :. ::. ...::
CCDS56 GTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG
130 140 150 160 170 180
90 100 110 120 130 140
pF1KB0 YAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
: : :..: :.. . . :.:.
CCDS56 SIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAH
190 200 210 220 230 240
>>CCDS45600.1 DLG4 gene_id:1742|Hs108|chr17 (721 aa)
initn: 431 init1: 272 opt: 282 Z-score: 316.6 bits: 66.8 E(32554): 2.6e-11
Smith-Waterman score: 282; 51.2% identity (83.3% similar) in 84 aa overlap (13-96:157-240)
10 20 30 40
pF1KB0 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGI
::.: .::.::::.:.::. .:.. .:..:
CCDS45 HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB0 YVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV
::..: :.::: ::::: :::::.::. :....:.::: ..:. .: :.:
CCDS45 YVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA
190 200 210 220 230 240
110 120 130 140
pF1KB0 QNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
CCDS45 YLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPR
250 260 270 280 290 300
>>CCDS82050.1 DLG4 gene_id:1742|Hs108|chr17 (724 aa)
initn: 431 init1: 272 opt: 282 Z-score: 316.6 bits: 66.8 E(32554): 2.6e-11
Smith-Waterman score: 282; 51.2% identity (83.3% similar) in 84 aa overlap (13-96:160-243)
10 20 30 40
pF1KB0 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGI
::.: .::.::::.:.::. .:.. .:..:
CCDS82 HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI
130 140 150 160 170 180
50 60 70 80 90 100
pF1KB0 YVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV
::..: :.::: ::::: :::::.::. :....:.::: ..:. .: :.:
CCDS82 YVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA
190 200 210 220 230 240
110 120 130 140
pF1KB0 QNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
CCDS82 YLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPR
250 260 270 280 290 300
>>CCDS75072.1 DLG1 gene_id:1739|Hs108|chr3 (892 aa)
initn: 432 init1: 279 opt: 283 Z-score: 316.5 bits: 67.1 E(32554): 2.6e-11
Smith-Waterman score: 283; 42.0% identity (71.4% similar) in 119 aa overlap (1-118:180-296)
10 20
pF1KB0 MNGR-VDYLVTEEEINLTRGPSGLGFNIVG
.:: .:: :::.: :: :::::.:.:
CCDS75 GFVSHSHISPIKANPPPVLVNTDSLETPTYVNGTDADY--EYEEITLERGNSGLGFSIAG
150 160 170 180 190 200
30 40 50 60 70 80
pF1KB0 GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG
:::. ....::.:....: .:::: ::::. .: :: :: :.... :. ::. ...::
CCDS75 GTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG
210 220 230 240 250 260
90 100 110 120 130 140
pF1KB0 YAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
: : :..: :.. . . :.:.
CCDS75 SIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAH
270 280 290 300 310 320
>>CCDS43194.1 DLG1 gene_id:1739|Hs108|chr3 (904 aa)
initn: 432 init1: 279 opt: 283 Z-score: 316.4 bits: 67.1 E(32554): 2.6e-11
Smith-Waterman score: 283; 42.0% identity (71.4% similar) in 119 aa overlap (1-118:213-329)
10 20
pF1KB0 MNGR-VDYLVTEEEINLTRGPSGLGFNIVG
.:: .:: :::.: :: :::::.:.:
CCDS43 AENTVILPTIPQANPPPVLVNTDSLETPTYVNGTDADY--EYEEITLERGNSGLGFSIAG
190 200 210 220 230 240
30 40 50 60 70 80
pF1KB0 GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG
:::. ....::.:....: .:::: ::::. .: :: :: :.... :. ::. ...::
CCDS43 GTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG
250 260 270 280 290 300
90 100 110 120 130 140
pF1KB0 YAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
: : :..: :.. . . :.:.
CCDS43 SIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAH
310 320 330 340 350 360
>>CCDS3327.1 DLG1 gene_id:1739|Hs108|chr3 (926 aa)
initn: 432 init1: 279 opt: 283 Z-score: 316.3 bits: 67.1 E(32554): 2.7e-11
Smith-Waterman score: 283; 42.0% identity (71.4% similar) in 119 aa overlap (1-118:213-329)
10 20
pF1KB0 MNGR-VDYLVTEEEINLTRGPSGLGFNIVG
.:: .:: :::.: :: :::::.:.:
CCDS33 AENTVILPTIPQANPPPVLVNTDSLETPTYVNGTDADY--EYEEITLERGNSGLGFSIAG
190 200 210 220 230 240
30 40 50 60 70 80
pF1KB0 GTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG
:::. ....::.:....: .:::: ::::. .: :: :: :.... :. ::. ...::
CCDS33 GTDNPHIGDDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG
250 260 270 280 290 300
90 100 110 120 130 140
pF1KB0 YAVSLRVQHRLQVQNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
: : :..: :.. . . :.:.
CCDS33 SIVRLYVKRRKPVSEKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAH
310 320 330 340 350 360
>>CCDS45599.1 DLG4 gene_id:1742|Hs108|chr17 (767 aa)
initn: 431 init1: 272 opt: 282 Z-score: 316.3 bits: 66.9 E(32554): 2.7e-11
Smith-Waterman score: 282; 51.2% identity (83.3% similar) in 84 aa overlap (13-96:203-286)
10 20 30 40
pF1KB0 MNGRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGI
::.: .::.::::.:.::. .:.. .:..:
CCDS45 HSAAVEALKEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI
180 190 200 210 220 230
50 60 70 80 90 100
pF1KB0 YVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLRVQHRLQV
::..: :.::: ::::: :::::.::. :....:.::: ..:. .: :.:
CCDS45 YVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSNA
240 250 260 270 280 290
110 120 130 140
pF1KB0 QNGPIGHRGEGDPSGIPIFMVLVPVFALTMVAAWAFMRYRQQL
CCDS45 YLSDSYAPPDITTSYSQHLDNEISHSSYLGTDYPTAMTPTSPRRYSPVAKDLLGEEDIPR
300 310 320 330 340 350
145 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:19:11 2016 done: Sat Nov 5 17:19:12 2016
Total Scan time: 1.510 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]