Result of FASTA (omim) for
pF1KB0927
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0927, 133 aa
1>>>pF1KB0927 133 - 133 aa - 133 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4907+/-0.000263; mu= 12.0654+/- 0.017
mean_var=82.4510+/-16.438, 0's: 0 Z-trim(121.9): 25 B-trim: 779 in 1/56
Lambda= 0.141246
statistics sampled from 39235 (39261) to 39235 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.81), E-opt: 0.2 (0.46), width: 16
Scan time: 4.410
The best scores are: opt bits E(85289)
NP_001123529 (OMIM: 130592) elongation factor 1-de ( 281) 485 107.2 1.7e-23
XP_006716588 (OMIM: 130592) PREDICTED: elongation ( 281) 485 107.2 1.7e-23
NP_001123527 (OMIM: 130592) elongation factor 1-de ( 281) 485 107.2 1.7e-23
NP_001276879 (OMIM: 130592) elongation factor 1-de ( 281) 485 107.2 1.7e-23
NP_001951 (OMIM: 130592) elongation factor 1-delta ( 281) 485 107.2 1.7e-23
XP_016868660 (OMIM: 130592) PREDICTED: elongation ( 646) 485 107.5 3.2e-23
NP_001123525 (OMIM: 130592) elongation factor 1-de ( 647) 485 107.5 3.3e-23
XP_006716586 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_005250880 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_006716587 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_016868659 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_011515207 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_011515208 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
XP_006716585 (OMIM: 130592) PREDICTED: elongation ( 647) 485 107.5 3.3e-23
NP_115754 (OMIM: 130592) elongation factor 1-delta ( 647) 485 107.5 3.3e-23
XP_006716582 (OMIM: 130592) PREDICTED: elongation ( 687) 485 107.5 3.4e-23
XP_005250877 (OMIM: 130592) PREDICTED: elongation ( 688) 485 107.5 3.4e-23
XP_016868658 (OMIM: 130592) PREDICTED: elongation ( 688) 485 107.5 3.4e-23
XP_016868657 (OMIM: 130592) PREDICTED: elongation ( 688) 485 107.5 3.4e-23
NP_001182132 (OMIM: 130592) elongation factor 1-de ( 262) 413 92.5 4.2e-19
NP_001304672 (OMIM: 130592) elongation factor 1-de ( 257) 227 54.6 1.1e-07
NP_001317575 (OMIM: 130592) elongation factor 1-de ( 257) 227 54.6 1.1e-07
NP_001123528 (OMIM: 130592) elongation factor 1-de ( 257) 227 54.6 1.1e-07
XP_016868661 (OMIM: 130592) PREDICTED: elongation ( 623) 227 54.9 2.1e-07
XP_006716583 (OMIM: 130592) PREDICTED: elongation ( 664) 227 54.9 2.2e-07
>>NP_001123529 (OMIM: 130592) elongation factor 1-delta (281 aa)
initn: 500 init1: 260 opt: 485 Z-score: 542.8 bits: 107.2 E(85289): 1.7e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)
10 20 30 40 50
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
::::::. ::::: :::: :::::::::::::::::: :: ::.::.::::::::: ::
NP_001 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
:::: ::::::: ::::.:::::::::::.:: ..: . .. :: ..:
NP_001 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
70 80 90 100 110 120
120 130
pF1KB0 AHVSHAPSGAPGQEASHTSRG
.: . ::
NP_001 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
130 140 150 160 170 180
>>XP_006716588 (OMIM: 130592) PREDICTED: elongation fact (281 aa)
initn: 500 init1: 260 opt: 485 Z-score: 542.8 bits: 107.2 E(85289): 1.7e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)
10 20 30 40 50
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
::::::. ::::: :::: :::::::::::::::::: :: ::.::.::::::::: ::
XP_006 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
:::: ::::::: ::::.:::::::::::.:: ..: . .. :: ..:
XP_006 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
70 80 90 100 110 120
120 130
pF1KB0 AHVSHAPSGAPGQEASHTSRG
.: . ::
XP_006 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
130 140 150 160 170 180
>>NP_001123527 (OMIM: 130592) elongation factor 1-delta (281 aa)
initn: 500 init1: 260 opt: 485 Z-score: 542.8 bits: 107.2 E(85289): 1.7e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)
10 20 30 40 50
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
::::::. ::::: :::: :::::::::::::::::: :: ::.::.::::::::: ::
NP_001 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
:::: ::::::: ::::.:::::::::::.:: ..: . .. :: ..:
NP_001 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
70 80 90 100 110 120
120 130
pF1KB0 AHVSHAPSGAPGQEASHTSRG
.: . ::
NP_001 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
130 140 150 160 170 180
>>NP_001276879 (OMIM: 130592) elongation factor 1-delta (281 aa)
initn: 500 init1: 260 opt: 485 Z-score: 542.8 bits: 107.2 E(85289): 1.7e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)
10 20 30 40 50
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
::::::. ::::: :::: :::::::::::::::::: :: ::.::.::::::::: ::
NP_001 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
:::: ::::::: ::::.:::::::::::.:: ..: . .. :: ..:
NP_001 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
70 80 90 100 110 120
120 130
pF1KB0 AHVSHAPSGAPGQEASHTSRG
.: . ::
NP_001 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
130 140 150 160 170 180
>>NP_001951 (OMIM: 130592) elongation factor 1-delta iso (281 aa)
initn: 500 init1: 260 opt: 485 Z-score: 542.8 bits: 107.2 E(85289): 1.7e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)
10 20 30 40 50
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
::::::. ::::: :::: :::::::::::::::::: :: ::.::.::::::::: ::
NP_001 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
:::: ::::::: ::::.:::::::::::.:: ..: . .. :: ..:
NP_001 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
70 80 90 100 110 120
120 130
pF1KB0 AHVSHAPSGAPGQEASHTSRG
.: . ::
NP_001 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
130 140 150 160 170 180
>>XP_016868660 (OMIM: 130592) PREDICTED: elongation fact (646 aa)
initn: 500 init1: 260 opt: 485 Z-score: 537.8 bits: 107.5 E(85289): 3.2e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:366-492)
10 20 30
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMN
::::::. ::::: :::: :::::::::::
XP_016 RVAWCLEAASLSHRPGPRSGLSVSSLRPKKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
340 350 360 370 380 390
40 50 60 70 80
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
::::::: :: ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
XP_016 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
400 410 420 430 440 450
90 100 110 120 130
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG
:: ..: . .. :: ..:.: . ::
XP_016 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
460 470 480 490 500 510
XP_016 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
520 530 540 550 560 570
>>NP_001123525 (OMIM: 130592) elongation factor 1-delta (647 aa)
initn: 500 init1: 260 opt: 485 Z-score: 537.8 bits: 107.5 E(85289): 3.3e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:367-493)
10 20 30
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMN
::::::. ::::: :::: :::::::::::
NP_001 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
340 350 360 370 380 390
40 50 60 70 80
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
::::::: :: ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
NP_001 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
400 410 420 430 440 450
90 100 110 120 130
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG
:: ..: . .. :: ..:.: . ::
NP_001 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
460 470 480 490 500 510
NP_001 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
520 530 540 550 560 570
>>XP_006716586 (OMIM: 130592) PREDICTED: elongation fact (647 aa)
initn: 500 init1: 260 opt: 485 Z-score: 537.8 bits: 107.5 E(85289): 3.3e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:367-493)
10 20 30
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMN
::::::. ::::: :::: :::::::::::
XP_006 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
340 350 360 370 380 390
40 50 60 70 80
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
::::::: :: ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
XP_006 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
400 410 420 430 440 450
90 100 110 120 130
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG
:: ..: . .. :: ..:.: . ::
XP_006 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
460 470 480 490 500 510
XP_006 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
520 530 540 550 560 570
>>XP_005250880 (OMIM: 130592) PREDICTED: elongation fact (647 aa)
initn: 500 init1: 260 opt: 485 Z-score: 537.8 bits: 107.5 E(85289): 3.3e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:367-493)
10 20 30
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMN
::::::. ::::: :::: :::::::::::
XP_005 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
340 350 360 370 380 390
40 50 60 70 80
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
::::::: :: ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
XP_005 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
400 410 420 430 440 450
90 100 110 120 130
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG
:: ..: . .. :: ..:.: . ::
XP_005 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
460 470 480 490 500 510
XP_005 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
520 530 540 550 560 570
>>XP_006716587 (OMIM: 130592) PREDICTED: elongation fact (647 aa)
initn: 500 init1: 260 opt: 485 Z-score: 537.8 bits: 107.5 E(85289): 3.3e-23
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:367-493)
10 20 30
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMN
::::::. ::::: :::: :::::::::::
XP_006 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
340 350 360 370 380 390
40 50 60 70 80
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
::::::: :: ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
XP_006 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
400 410 420 430 440 450
90 100 110 120 130
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG
:: ..: . .. :: ..:.: . ::
XP_006 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
460 470 480 490 500 510
XP_006 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
520 530 540 550 560 570
133 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:18:03 2016 done: Sat Nov 5 17:18:03 2016
Total Scan time: 4.410 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]