FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0927, 133 aa
  1>>>pF1KB0927 133 - 133 aa - 133 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3359+/-0.000572; mu= 13.0922+/- 0.035
 mean_var=80.7097+/-16.044, 0's: 0 Z-trim(114.5): 5  B-trim: 144 in 1/51
 Lambda= 0.142762
 statistics sampled from 15101 (15105) to 15101 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.809), E-opt: 0.2 (0.464), width:  16
 Scan time:  1.640

The best scores are:                                      opt bits E(32554)
CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8           ( 281)  485 108.1 3.4e-24
CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8           ( 647)  485 108.4 6.5e-24
CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8          ( 262)  413 93.3 9.5e-20


>>CCDS6405.1 EEF1D gene_id:1936|Hs108|chr8                (281 aa)
 initn: 500 init1: 260 opt: 485  Z-score: 547.8  bits: 108.1 E(32554): 3.4e-24
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:1-127)

               10        20        30        40          50        
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
       ::::::. ::::: :::: :::::::::::::::::: ::  ::.::.::::::::: ::
CCDS64 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
               10        20        30        40        50        60

       60        70        80        90             100       110  
pF1KB0 LAGSLGPGASSGPSGDHSELVVRIASLEVDNQ------RDLAERAGEELARPLGHSPADP
       :::: ::::::: ::::.:::::::::::.::      ..: .  ..  ::      ..:
CCDS64 LAGSSGPGASSGTSGDHGELVVRIASLEVENQSLRGVVQELQQAISKLEARLNVLEKSSP
               70        80        90       100       110       120

            120       130                                          
pF1KB0 AHVSHAPSGAPGQEASHTSRG                                       
       .: . ::                                                     
CCDS64 GHRATAPQTQHVSPMRQVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLR
              130       140       150       160       170       180

>>CCDS6404.1 EEF1D gene_id:1936|Hs108|chr8                (647 aa)
 initn: 500 init1: 260 opt: 485  Z-score: 542.8  bits: 108.4 E(32554): 6.5e-24
Smith-Waterman score: 485; 66.9% identity (78.0% similar) in 127 aa overlap (1-119:367-493)

                                             10        20        30
pF1KB0                               MATNFLVGEKIWFHKFKYGDAERRFYEQMN
                                     ::::::. ::::: :::: :::::::::::
CCDS64 VAWCLEAASLSHRPGPRSGLSVSSLRPNRKMATNFLAHEKIWFDKFKYDDAERRFYEQMN
        340       350       360       370       380       390      

               40          50        60        70        80        
pF1KB0 GPVAGASLQE--ASMILHDIARARENIPKSLAGSLGPGASSGPSGDHSELVVRIASLEVD
       ::::::: ::  ::.::.::::::::: :::::: ::::::: ::::.:::::::::::.
CCDS64 GPVAGASRQENGASVILRDIARARENIQKSLAGSSGPGASSGTSGDHGELVVRIASLEVE
        400       410       420       430       440       450      

       90             100       110       120       130            
pF1KB0 NQ------RDLAERAGEELARPLGHSPADPAHVSHAPSGAPGQEASHTSRG         
       ::      ..: .  ..  ::      ..:.: . ::                       
CCDS64 NQSLRGVVQELQQAISKLEARLNVLEKSSPGHRATAPQTQHVSPMRQVEPPAKKPATPAE
        460       470       480       490       500       510      

CCDS64 DDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKSSILLDVKPWDDETD
        520       530       540       550       560       570      

>>CCDS56559.1 EEF1D gene_id:1936|Hs108|chr8               (262 aa)
 initn: 425 init1: 233 opt: 413  Z-score: 468.1  bits: 93.3 E(32554): 9.5e-20
Smith-Waterman score: 413; 57.9% identity (74.4% similar) in 133 aa overlap (1-127:1-130)

               10        20        30        40          50        
pF1KB0 MATNFLVGEKIWFHKFKYGDAERRFYEQMNGPVAGASLQE--ASMILHDIARARENIPKS
       ::::::. ::::: :::: :::::::::::::::::: ::  ::.::.::::::::: ::
CCDS56 MATNFLAHEKIWFDKFKYDDAERRFYEQMNGPVAGASRQENGASVILRDIARARENIQKS
               10        20        30        40        50        60

       60        70          80        90         100       110    
pF1KB0 LAGSLGPGASSGPSGDH--SELVVRIASLEVDNQRDLAERA--GEELARPLGHSPADPAH
       :::: ::::::: ::::  .::   :..::.  . .. :..  :.. . :  .  ..: .
CCDS56 LAGSSGPGASSGTSGDHVVQELQQAISKLEA--RLNVLEKSSPGHRATAPQTQH-VSPMR
               70        80        90         100       110        

          120       130                                            
pF1KB0 VSHAPSGAPGQEASHTSRG                                         
         . :.  :.  :                                               
CCDS56 QVEPPAKKPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREERLRQYAEKKAKKPALVAKS
       120       130       140       150       160       170       




133 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:18:02 2016 done: Sat Nov  5 17:18:03 2016
 Total Scan time:  1.640 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]