FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0923, 122 aa
  1>>>pF1KB0923 122 - 122 aa - 122 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5131+/-0.00026; mu= 6.1617+/- 0.016
 mean_var=111.6278+/-21.697, 0's: 0 Z-trim(122.7): 8  B-trim: 0 in 0/55
 Lambda= 0.121391
 statistics sampled from 41241 (41256) to 41241 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.833), E-opt: 0.2 (0.484), width:  16
 Scan time:  5.280

The best scores are:                                      opt bits E(85289)
XP_016876112 (OMIM: 613715,613717) PREDICTED: DNA- ( 122)  822 153.1   1e-37
NP_689918 (OMIM: 613715,613717) DNA-directed RNA p ( 122)  822 153.1   1e-37
XP_005266471 (OMIM: 613715,613717) PREDICTED: DNA- ( 122)  822 153.1   1e-37
NP_001193488 (OMIM: 613715,613717) DNA-directed RN (  94)  654 123.6 5.9e-29
XP_016876111 (OMIM: 613715,613717) PREDICTED: DNA- ( 125)  599 114.1 5.9e-26


>>XP_016876112 (OMIM: 613715,613717) PREDICTED: DNA-dire  (122 aa)
 initn: 822 init1: 822 opt: 822  Z-score: 798.2  bits: 153.1 E(85289): 1e-37
Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
               70        80        90       100       110       120

         
pF1KB0 RR
       ::
XP_016 RR
         

>>NP_689918 (OMIM: 613715,613717) DNA-directed RNA polym  (122 aa)
 initn: 822 init1: 822 opt: 822  Z-score: 798.2  bits: 153.1 E(85289): 1e-37
Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_689 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
               70        80        90       100       110       120

         
pF1KB0 RR
       ::
NP_689 RR
         

>>XP_005266471 (OMIM: 613715,613717) PREDICTED: DNA-dire  (122 aa)
 initn: 822 init1: 822 opt: 822  Z-score: 798.2  bits: 153.1 E(85289): 1e-37
Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
               70        80        90       100       110       120

         
pF1KB0 RR
       ::
XP_005 RR
         

>>NP_001193488 (OMIM: 613715,613717) DNA-directed RNA po  (94 aa)
 initn: 654 init1: 654 opt: 654  Z-score: 640.8  bits: 123.6 E(85289): 5.9e-29
Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 94 aa overlap (29-122:1-94)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
                                   ::::::::::::::::::::::::::::::::
NP_001                             MGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
                                           10        20        30  

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
             40        50        60        70        80        90  

         
pF1KB0 RR
       ::
NP_001 RR
         

>>XP_016876111 (OMIM: 613715,613717) PREDICTED: DNA-dire  (125 aa)
 initn: 599 init1: 599 opt: 599  Z-score: 587.0  bits: 114.1 E(85289): 5.9e-26
Smith-Waterman score: 599; 100.0% identity (100.0% similar) in 88 aa overlap (35-122:38-125)

           10        20        30        40        50        60    
pF1KB0 QELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKEQDHE
                                     ::::::::::::::::::::::::::::::
XP_016 CVIISMEYCQARKLICGSAFKVFIAVSLNRMKCPLASTNKRFLINTIKNTLPSHKEQDHE
        10        20        30        40        50        60       

           70        80        90       100       110       120  
pF1KB0 QKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSNRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSNRR
        70        80        90       100       110       120     




122 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:16:04 2016 done: Sat Nov  5 17:16:05 2016
 Total Scan time:  5.280 Total Display time: -0.040

Function used was FASTA [36.3.4 Apr, 2011]