FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0923, 122 aa
  1>>>pF1KB0923 122 - 122 aa - 122 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3669+/-0.000606; mu= 7.1313+/- 0.037
 mean_var=106.8044+/-20.904, 0's: 0 Z-trim(115.2): 5  B-trim: 269 in 1/51
 Lambda= 0.124102
 statistics sampled from 15746 (15750) to 15746 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.484), width:  16
 Scan time:  1.800

The best scores are:                                      opt bits E(32554)
CCDS9324.1 POLR1D gene_id:51082|Hs108|chr13        ( 122)  822 156.2 4.7e-39
CCDS73555.1 POLR1D gene_id:51082|Hs108|chr13       (  94)  654 126.0 4.4e-30


>>CCDS9324.1 POLR1D gene_id:51082|Hs108|chr13             (122 aa)
 initn: 822 init1: 822 opt: 822  Z-score: 814.5  bits: 156.2 E(32554): 4.7e-39
Smith-Waterman score: 822; 100.0% identity (100.0% similar) in 122 aa overlap (1-122:1-122)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
               70        80        90       100       110       120

         
pF1KB0 RR
       ::
CCDS93 RR
         

>>CCDS73555.1 POLR1D gene_id:51082|Hs108|chr13            (94 aa)
 initn: 654 init1: 654 opt: 654  Z-score: 653.6  bits: 126.0 E(32554): 4.4e-30
Smith-Waterman score: 654; 100.0% identity (100.0% similar) in 94 aa overlap (29-122:1-94)

               10        20        30        40        50        60
pF1KB0 MEEDQELERKAIEELLKEAKRGKTRAETMGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
                                   ::::::::::::::::::::::::::::::::
CCDS73                             MGPMGWMKCPLASTNKRFLINTIKNTLPSHKE
                                           10        20        30  

               70        80        90       100       110       120
pF1KB0 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QDHEQKEGDKEPAKSQAQKEENPKKHRSHPYKHSFRARGSASYSPPRKRSSQDKYEKRSN
             40        50        60        70        80        90  

         
pF1KB0 RR
       ::
CCDS73 RR
         




122 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:16:03 2016 done: Sat Nov  5 17:16:04 2016
 Total Scan time:  1.800 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]