FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0911, 148 aa
  1>>>pF1KB0911 148 - 148 aa - 148 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.2916+/-0.000392; mu= -22.2451+/- 0.025
 mean_var=658.7459+/-135.827, 0's: 0 Z-trim(128.6): 40  B-trim: 1038 in 1/61
 Lambda= 0.049971
 statistics sampled from 60000 (60458) to 60501 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.898), E-opt: 0.2 (0.711), width:  16
 Scan time:  6.240

The best scores are:                                      opt bits E(85289)
NP_060927 (OMIM: 610459) proline-rich protein 13 i ( 148) 1179 97.6   8e-21
NP_001005354 (OMIM: 610459) proline-rich protein 1 (  98)  693 62.3 2.1e-10


>>NP_060927 (OMIM: 610459) proline-rich protein 13 isofo  (148 aa)
 initn: 1179 init1: 1179 opt: 1179  Z-score: 494.8  bits: 97.6 E(85289): 8e-21
Smith-Waterman score: 1179; 100.0% identity (100.0% similar) in 148 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB0 MWNPNAGQPGPNPYPPNIGCPGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MWNPNAGQPGPNPYPPNIGCPGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 HPVPQPGYPGCQPLGPYPPPYPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKM
               70        80        90       100       110       120

              130       140        
pF1KB0 HKHQKHHKYHKHGKHSSSSSSSSSSDSD
       ::::::::::::::::::::::::::::
NP_060 HKHQKHHKYHKHGKHSSSSSSSSSSDSD
              130       140        

>>NP_001005354 (OMIM: 610459) proline-rich protein 13 is  (98 aa)
 initn: 692 init1: 692 opt: 693  Z-score: 307.6  bits: 62.3 E(85289): 2.1e-10
Smith-Waterman score: 693; 95.9% identity (95.9% similar) in 98 aa overlap (51-148:3-98)

               30        40        50        60        70        80
pF1KB0 PGGSNPAHPPPINPPFPPGPCPPPPGAPHGNPAFPPGGPPHPVPQPGYPGCQPLGPYPPP
                                     ::    ::::::::::::::::::::::::
NP_001                             MWNPN--AGGPPHPVPQPGYPGCQPLGPYPPP
                                             10        20        30

               90       100       110       120       130       140
pF1KB0 YPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YPPPAPGIPPVNPLAPGMVGPAVIVDKKMQKKMKKAHKKMHKHQKHHKYHKHGKHSSSSS
               40        50        60        70        80        90

               
pF1KB0 SSSSSDSD
       ::::::::
NP_001 SSSSSDSD
               




148 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:12:09 2016 done: Sat Nov  5 17:12:10 2016
 Total Scan time:  6.240 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]