FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0908, 311 aa
  1>>>pF1KB0908 311 - 311 aa - 311 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7681+/-0.00083; mu= 13.4665+/- 0.050
 mean_var=65.9946+/-13.214, 0's: 0 Z-trim(107.2): 21  B-trim: 291 in 1/50
 Lambda= 0.157877
 statistics sampled from 9420 (9426) to 9420 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.29), width:  16
 Scan time:  2.570

The best scores are:                                      opt bits E(32554)
CCDS6945.1 MED27 gene_id:9442|Hs108|chr9           ( 311) 2062 478.2 3.4e-135
CCDS59153.1 MED27 gene_id:9442|Hs108|chr9          ( 275) 1240 291.0   7e-79
CCDS69689.1 MED27 gene_id:9442|Hs108|chr9          ( 130)  751 179.5 1.2e-45


>>CCDS6945.1 MED27 gene_id:9442|Hs108|chr9                (311 aa)
 initn: 2062 init1: 2062 opt: 2062  Z-score: 2540.6  bits: 478.2 E(32554): 3.4e-135
Smith-Waterman score: 2062; 100.0% identity (100.0% similar) in 311 aa overlap (1-311:1-311)

               10        20        30        40        50        60
pF1KB0 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SRPNGTSAMLLVTLGKVLKVIVVMRSLFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SRPNGTSAMLLVTLGKVLKVIVVMRSLFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 KVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDGLPPTWRDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 KVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDGLPPTWRDFR
              250       260       270       280       290       300

              310 
pF1KB0 TLEAFHDTCRQ
       :::::::::::
CCDS69 TLEAFHDTCRQ
              310 

>>CCDS59153.1 MED27 gene_id:9442|Hs108|chr9               (275 aa)
 initn: 1240 init1: 1240 opt: 1240  Z-score: 1529.6  bits: 291.0 E(32554): 7e-79
Smith-Waterman score: 1760; 88.4% identity (88.4% similar) in 311 aa overlap (1-311:1-275)

               10        20        30        40        50        60
pF1KB0 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 SRPNGTSAMLLVTLGKVLKVIVVMRSLFIDRTIVKGYNENVYTEDGKLDIWSKSNYQVFQ
       :::::::::::                                    :::::::::::::
CCDS59 SRPNGTSAMLL------------------------------------LDIWSKSNYQVFQ
              190                                           200    

              250       260       270       280       290       300
pF1KB0 KVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDGLPPTWRDFR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59 KVTDHATTALLHYQLPQMPDVVVRSFMTWLRSYIKLFQAPCQRCGKFLQDGLPPTWRDFR
          210       220       230       240       250       260    

              310 
pF1KB0 TLEAFHDTCRQ
       :::::::::::
CCDS59 TLEAFHDTCRQ
          270     

>>CCDS69689.1 MED27 gene_id:9442|Hs108|chr9               (130 aa)
 initn: 751 init1: 751 opt: 751  Z-score: 933.0  bits: 179.5 E(32554): 1.2e-45
Smith-Waterman score: 751; 100.0% identity (100.0% similar) in 116 aa overlap (1-116:1-116)

               10        20        30        40        50        60
pF1KB0 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MADVINVSVNLEAFSQAISAIQALRSSVSRVFDCLKDGMRNKETLEGREKAFIAHFQDNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKLQYH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS69 HSVNRDLNELERLSNLVGKPSENHPLHNSGLLSLDPVQDKTPLYSQLLQAYKWSNKKEQL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 AGLASGLLNQQSLKRSANQMGVSAKRRPKAQPTTLVLPPQYVDDVISRIDRMFPEMSIHL
                                                                   
CCDS69 SIPRIFHWKV                                                  
              130                                                  




311 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:09:23 2016 done: Sat Nov  5 17:09:23 2016
 Total Scan time:  2.570 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]