Result of FASTA (ccds) for
pF1KB0905
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0905, 93 aa
1>>>pF1KB0905 93 - 93 aa - 93 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4358+/-0.000578; mu= 7.7215+/- 0.034
mean_var=59.1946+/-11.672, 0's: 0 Z-trim(111.8): 41 B-trim: 0 in 0/50
Lambda= 0.166699
statistics sampled from 12616 (12663) to 12616 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.78), E-opt: 0.2 (0.389), width: 16
Scan time: 1.420
The best scores are: opt bits E(32554)
CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 ( 93) 639 161.2 8.6e-41
CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 ( 109) 483 123.7 1.9e-29
CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 ( 93) 323 85.2 6.5e-18
CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 ( 92) 318 84.0 1.5e-17
CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 ( 92) 307 81.3 9.2e-17
CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 ( 89) 271 72.7 3.6e-14
CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 ( 87) 268 71.9 5.8e-14
CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 ( 91) 248 67.1 1.7e-12
CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17 ( 120) 246 66.7 3.1e-12
CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 ( 98) 236 64.3 1.3e-11
CCDS11305.1 CCL23 gene_id:6368|Hs108|chr17 ( 137) 236 64.3 1.8e-11
CCDS59282.1 CCL23 gene_id:6368|Hs108|chr17 ( 120) 230 62.8 4.4e-11
>>CCDS32624.1 CCL14 gene_id:6358|Hs108|chr17 (93 aa)
initn: 639 init1: 639 opt: 639 Z-score: 845.8 bits: 161.2 E(32554): 8.6e-41
Smith-Waterman score: 639; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
10 20 30 40 50 60
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::::::::::::::::::::::::::::::::
CCDS32 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90
>>CCDS45652.1 CCL14 gene_id:6358|Hs108|chr17 (109 aa)
initn: 619 init1: 483 opt: 483 Z-score: 642.0 bits: 123.7 E(32554): 1.9e-29
Smith-Waterman score: 591; 84.4% identity (85.3% similar) in 109 aa overlap (1-93:1-109)
10 20 30 40
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSR----------------GPYHPSECCFTYTTYKI
::::::::::::::::::::::::::. :::::::::::::::::
CCDS45 MKISVAAIPFFLLITIALGTKTESSSQTGGKPKVVKIQLKLVGGPYHPSECCFTYTTYKI
10 20 30 40 50 60
50 60 70 80 90
pF1KB0 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PRQRIMDYYETNSQCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
70 80 90 100
>>CCDS32626.1 CCL3L3 gene_id:414062|Hs108|chr17 (93 aa)
initn: 325 init1: 307 opt: 323 Z-score: 435.1 bits: 85.2 E(32554): 6.5e-18
Smith-Waterman score: 323; 47.3% identity (82.4% similar) in 91 aa overlap (1-91:1-90)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:..:.::. :: :.:: ... :. . :. :::.::. .::.. : ::.::.::::
CCDS32 MQVSTAALAV-LLCTMALCNQVLSAPLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
::...:.::::..::..::..::: :..:..
CCDS32 KPSVIFLTKRGRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS11307.1 CCL3 gene_id:6348|Hs108|chr17 (92 aa)
initn: 299 init1: 279 opt: 318 Z-score: 428.7 bits: 84.0 E(32554): 1.5e-17
Smith-Waterman score: 318; 48.4% identity (82.4% similar) in 91 aa overlap (1-91:1-89)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:..:.::. :: :.:: .. :.: . :. :::.::. .::.. : ::.::.::::
CCDS11 MQVSTAALAV-LLCTMALCNQF-SASLAADTPTACCFSYTSRQIPQNFIADYFETSSQCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::..:.:::...::..::..::: :..:..
CCDS11 KPGVIFLTKRSRQVCADPSEEWVQKYVSDLELSA
60 70 80 90
>>CCDS11308.1 CCL4 gene_id:6351|Hs108|chr17 (92 aa)
initn: 295 init1: 268 opt: 307 Z-score: 414.4 bits: 81.3 E(32554): 9.2e-17
Smith-Waterman score: 307; 43.0% identity (80.6% similar) in 93 aa overlap (1-93:1-92)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::. :... ...:.. :. . . :. : :. :::.::. :.::. ..:::::.: ::
CCDS11 MKLCVTVLSLLMLVA-AFCSPALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
.:..:: :::...::..::..:::.:. :.. :
CCDS11 QPAVVFQTKRSKQVCADPSESWVQEYVYDLELN
60 70 80 90
>>CCDS11306.1 CCL18 gene_id:6362|Hs108|chr17 (89 aa)
initn: 290 init1: 267 opt: 271 Z-score: 367.8 bits: 72.7 E(32554): 3.6e-14
Smith-Waterman score: 271; 41.9% identity (76.3% similar) in 93 aa overlap (1-93:1-88)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
:: ..:: . :. :.:: . .. .. . ::..::...::.. :.:: ::. ::
CCDS11 MK-GLAAALLVLVCTMALCSCAQVGT----NKELCCLVYTSWQIPQKFIVDYSETSPQCP
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
:::....::::...:..:. :::: ::.:.: :
CCDS11 KPGVILLTKRGRQICADPNKKWVQKYISDLKLNA
60 70 80
>>CCDS32627.2 CCL4L2 gene_id:9560|Hs108|chr17 (87 aa)
initn: 249 init1: 153 opt: 268 Z-score: 364.1 bits: 71.9 E(32554): 5.8e-14
Smith-Waterman score: 268; 39.8% identity (76.3% similar) in 93 aa overlap (1-93:1-87)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::. :... ...:.. :. . . :. : :. :::.::. :.::. ..:::::.: ::
CCDS32 MKLCVTVLSLLVLVA-AFCSLALSAPMGSDPPTACCFSYTARKLPRNFVVDYYETSSLCS
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
.:..: :..::..::..:::.:. :.. :
CCDS32 QPAVV-----GKQVCADPSESWVQEYVYDLELN
60 70 80
>>CCDS11300.1 CCL5 gene_id:6352|Hs108|chr17 (91 aa)
initn: 256 init1: 219 opt: 248 Z-score: 337.8 bits: 67.1 E(32554): 1.7e-12
Smith-Waterman score: 248; 38.7% identity (74.2% similar) in 93 aa overlap (1-91:1-89)
10 20 30 40 50
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHP--SECCFTYTTYKIPRQRIMDYYETNSQ
::.:.::. .::. :: .: .:: . :::.: . .:: .: .:. :...
CCDS11 MKVSAAALAV-ILIATAL---CAPASASPYSSDTTPCCFAYIARPLPRAHIKEYFYTSGK
10 20 30 40 50
60 70 80 90
pF1KB0 CSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
::.:..::.:.....::.:: :::..::....
CCDS11 CSNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
>>CCDS11303.1 CCL16 gene_id:6360|Hs108|chr17 (120 aa)
initn: 249 init1: 161 opt: 246 Z-score: 333.2 bits: 66.7 E(32554): 3.1e-12
Smith-Waterman score: 246; 41.3% identity (69.6% similar) in 92 aa overlap (1-89:1-90)
10 20 30 40 50
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPY---HPSECCFTYTTYKIPRQRIMDYYETNS
::.: ::. ...:: : . . ..:. . : :: ::. : .::. .. : .. .
CCDS11 MKVSEAALSLLVLILI-ITSASRSQPKVPEWVNTPSTCCLKYYEKVLPRRLVVGYRKALN
10 20 30 40 50
60 70 80 90
pF1KB0 QCSKPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
: :.:.:.:::.. :::::.: :::.::::
CCDS11 -CHLPAIIFVTKRNREVCTNPNDDWVQEYIKDPNLPLLPTRNLSTVKIITAKNGQPQLLN
60 70 80 90 100 110
CCDS11 SQ
120
>>CCDS11281.1 CCL13 gene_id:6357|Hs108|chr17 (98 aa)
initn: 238 init1: 224 opt: 236 Z-score: 321.7 bits: 64.3 E(32554): 1.3e-11
Smith-Waterman score: 236; 37.8% identity (72.2% similar) in 90 aa overlap (1-90:1-89)
10 20 30 40 50 60
pF1KB0 MKISVAAIPFFLLITIALGTKTESSSRGPYHPSECCFTYTTYKIPRQRIMDYYETNSQCS
::.: :.. .::.: :.. . .. . :: ::::... :: ::. .: :.:.:
CCDS11 MKVS-AVLLCLLLMTAAFNPQGLAQPDALNVPSTCCFTFSSKKISLQRLKSYVITTSRCP
10 20 30 40 50
70 80 90
pF1KB0 KPGIVFITKRGHSVCTNPSDKWVQDYIKDMKEN
. ...: :: :. .:..:..::::.:.: .
CCDS11 QKAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLKT
60 70 80 90
93 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:07:52 2016 done: Sat Nov 5 17:07:52 2016
Total Scan time: 1.420 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]