FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0491, 593 aa
  1>>>pF1KB0491 593 - 593 aa - 593 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9734+/-0.000859; mu= 3.7579+/- 0.052
 mean_var=202.5675+/-40.739, 0's: 0 Z-trim(113.8): 11  B-trim: 131 in 1/51
 Lambda= 0.090113
 statistics sampled from 14436 (14444) to 14436 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.444), width:  16
 Scan time:  4.370

The best scores are:                                      opt bits E(32554)
CCDS9962.1 BEGAIN gene_id:57596|Hs108|chr14        ( 593) 3966 528.1 1.2e-149
CCDS4898.1 TJAP1 gene_id:93643|Hs108|chr6          ( 547)  557 84.9   3e-16


>>CCDS9962.1 BEGAIN gene_id:57596|Hs108|chr14             (593 aa)
 initn: 3966 init1: 3966 opt: 3966  Z-score: 2800.0  bits: 528.1 E(32554): 1.2e-149
Smith-Waterman score: 3966; 100.0% identity (100.0% similar) in 593 aa overlap (1-593:1-593)

               10        20        30        40        50        60
pF1KB0 MEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELEKVTEKLRRI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 MEKLSALQEQKGELRKRLSYTTHKLEKLETEFDSTRHYLEIELRRAQEELEKVTEKLRRI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 QSNYMALQRINQELEDKLYRMGQHYEEEKRALSHEIVALNSHLLEAKVTIDKLSEDNELY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 QSNYMALQRINQELEDKLYRMGQHYEEEKRALSHEIVALNSHLLEAKVTIDKLSEDNELY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 RKDCNLAAQLLQCSQTYGRVHKVSELPSDFQERVSLHMEKHGCSLPSPLCHPAYADSVPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 RKDCNLAAQLLQCSQTYGRVHKVSELPSDFQERVSLHMEKHGCSLPSPLCHPAYADSVPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 CVIAKVLEKPDPASLSSRLSDASARDLAFCDGVEKPGPRPPYKGDIYCSDTALYCPEERR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 CVIAKVLEKPDPASLSSRLSDASARDLAFCDGVEKPGPRPPYKGDIYCSDTALYCPEERR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 RDRRPSVDAPVTDVGFLRAQNSTDSAAEEEEEAEAAAFPAGFQHEAFPSYAGSLPTSSSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 RDRRPSVDAPVTDVGFLRAQNSTDSAAEEEEEAEAAAFPAGFQHEAFPSYAGSLPTSSSY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 SSFSATSEEKEHAQASTLTASQQAIYLNSRDELFDRKPPATTYEGSPRFAKATAAVAAPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SSFSATSEEKEHAQASTLTASQQAIYLNSRDELFDRKPPATTYEGSPRFAKATAAVAAPL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 EAEVAPGFGRTMSPYPAETFRFPASPGPQQALMPPNLWSLRAKPGTARLPGEDMRGQWRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 EAEVAPGFGRTMSPYPAETFRFPASPGPQQALMPPNLWSLRAKPGTARLPGEDMRGQWRP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 LSVEDIGAYSYPVSAAGRASPCSFSERYYGGAGGSPGKKADGRASPLYASYKADSFSEGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 LSVEDIGAYSYPVSAAGRASPCSFSERYYGGAGGSPGKKADGRASPLYASYKADSFSEGD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB0 DLSQGHLAEPCFLRAGGDLSLSPGRSADPLPGYAPSEGGDGDRLGVQLCGTASSPEPEQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 DLSQGHLAEPCFLRAGGDLSLSPGRSADPLPGYAPSEGGDGDRLGVQLCGTASSPEPEQG
              490       500       510       520       530       540

              550       560       570       580       590   
pF1KB0 SRDSLEPSSMEASPEMHPAARLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS99 SRDSLEPSSMEASPEMHPAARLSPQQAFPRTGGSGLSRKDSLTKAQLYGTLLN
              550       560       570       580       590   

>>CCDS4898.1 TJAP1 gene_id:93643|Hs108|chr6               (547 aa)
 initn: 666 init1: 469 opt: 557  Z-score: 405.3  bits: 84.9 E(32554): 3e-16
Smith-Waterman score: 610; 33.2% identity (56.2% similar) in 470 aa overlap (2-411:40-507)

                                            10        20        30 
pF1KB0                              MEKLSALQEQKGELRKRLSYTTHKLEKLETE
                                     :... :::.. :::.::. .:.. : :: :
CCDS48 PYRKAPPEHRELRLEIPGSRLEQEEPLTDAERMKLLQEENEELRRRLASATRRTEALERE
      10        20        30        40        50        60         

              40        50        60        70        80        90 
pF1KB0 FDSTRHYLEIELRRAQEELEKVTEKLRRIQSNYMALQRINQELEDKLYRMGQHYEEEKRA
       ..  .  ::.:: ...:::.:  .:.::.:..: : :: ::::::::. . .. : ....
CCDS48 LEIGQDCLELELGQSREELDKFKDKFRRLQNSYTASQRTNQELEDKLHTLIKKAEMDRKT
      70        80        90       100       110       120         

             100       110       120       130       140       150 
pF1KB0 LSHEIVALNSHLLEAKVTIDKLSEDNELYRKDCNLAAQLLQCSQTYGRVHKVSELPSDFQ
       :. ::: :...::.:: ::.:: : :: :: :::::.:::.:.... : :: ..:: ..:
CCDS48 LDWEIVELTNKLLDAKNTINKLEELNERYRLDCNLAVQLLKCNKSHFRNHKFADLPCELQ
     130       140       150       160       170       180         

             160       170         180       190       200         
pF1KB0 ERVSLHMEKHGCSLPSPLCHPAYADS--VPTCVIAKVLEKPDPASLSSRLSDASARDLA-
       . :  :... :    ::   :. : .  ::: :::.:::::.   :.:  : ...: :: 
CCDS48 DMVRKHLHS-GQEAASPGPAPSLAPGAVVPTSVIARVLEKPESLLLNSAQSGSAGRPLAE
     190        200       210       220       230       240        

             210               220       230              240      
pF1KB0 -------FCDGVE-------KPG-PRPPYKGDIYCSDTALYCPEER-------RRDRRPS
              . .::         :: : :  .:. .   ::   :::.       . .  :.
CCDS48 DVFVHVDMSEGVPGDPASPPAPGSPTPQPNGECHSLGTARGSPEEELPLPAFEKLNPYPT
      250       260       270       280       290       300        

        250               260       270       280           290    
pF1KB0 VDAP--------VTDVGFLRAQNSTDSAAEEEEEAEAAAFPAGFQHE----AFPSYAGSL
        . :        : . .  ...   .:   .   :   :.  .. .:    : :: . : 
CCDS48 PSPPHPLYPGRRVIEFSEDKVRIPRNSPLPNCTYATRQAISLSLVEEGSERARPSPVPST
      310       320       330       340       350       360        

          300       310       320       330                340     
pF1KB0 PTSSSYSSFSATSEEKEHAQASTLTASQQAIYLNSRDELF-DRKPP--------ATTYEG
       :.:.. :     :      .: . .::..   : : .. : :: ::        :   ..
CCDS48 PASAQASPHHQPSPAPLTLSAPASSASSEEDLLVSWQRAFVDRTPPPAAVAQRTAFGRDA
      370       380       390       400       410       420        

             350               360        370       380        390 
pF1KB0 SPR----FAKATA--------AVAAPLEAEVA-PGFGRTMSPYPAETFRFPASPGPQ-QA
        :.    ::.. :          : : :.:.  :    .  :   : . .: ::  . :.
CCDS48 LPELQRHFAHSPADRDEVVQAPSARPEESELLLPTEPDSGFPREEEELNLPISPEEERQS
      430       440       450       460       470       480        

             400       410       420       430       440       450 
pF1KB0 LMPPNLWSLRAKPGTARLPGEDMRGQWRPLSVEDIGAYSYPVSAAGRASPCSFSERYYGG
       :.: :  . .  :::..  :                                        
CCDS48 LLPINR-GTEEGPGTSHTEGRAWPLPSSSRPQRSPKRMGVHHLHRKDSLTQAQEQGNLLN
      490        500       510       520       530       540       




593 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:05:32 2016 done: Sat Nov  5 17:05:32 2016
 Total Scan time:  4.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]