Result of FASTA (ccds) for
pF1KB0447
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0447, 501 aa
1>>>pF1KB0447 501 - 501 aa - 501 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8395+/-0.000867; mu= 16.8328+/- 0.052
mean_var=92.8536+/-18.329, 0's: 0 Z-trim(108.7): 23 B-trim: 129 in 1/51
Lambda= 0.133099
statistics sampled from 10396 (10403) to 10396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.32), width: 16
Scan time: 3.270
The best scores are: opt bits E(32554)
CCDS47832.1 CLU gene_id:1191|Hs108|chr8 ( 449) 3016 589.3 2.9e-168
CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18 ( 466) 332 73.9 4.2e-13
CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18 ( 518) 332 74.0 4.6e-13
>>CCDS47832.1 CLU gene_id:1191|Hs108|chr8 (449 aa)
initn: 3016 init1: 3016 opt: 3016 Z-score: 3134.3 bits: 589.3 E(32554): 2.9e-168
Smith-Waterman score: 3016; 100.0% identity (100.0% similar) in 449 aa overlap (53-501:1-449)
30 40 50 60 70 80
pF1KB0 PSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLFVGLLLTWESGQVLGDQTVSDNE
::::::::::::::::::::::::::::::
CCDS47 MMKTLLLFVGLLLTWESGQVLGDQTVSDNE
10 20 30
90 100 110 120 130 140
pF1KB0 LQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALNETRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALNETRE
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB0 SETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQSSPF
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB0 YFWMNGDRIDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRFFTREPQDTYHYLPFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YFWMNGDRIDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRFFTREPQDTYHYLPFS
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB0 LPHRRPHFFFPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMIHEAQQAMDIHFHSPAFQHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LPHRRPHFFFPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMIHEAQQAMDIHFHSPAFQHP
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB0 PTEFIREGDDDRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PTEFIREGDDDRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDES
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB0 LQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LQVAERLTRKYNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVA
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB0 SHTSDSDVPSGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SHTSDSDVPSGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
400 410 420 430 440
>>CCDS42405.1 CLUL1 gene_id:27098|Hs108|chr18 (466 aa)
initn: 274 init1: 120 opt: 332 Z-score: 348.7 bits: 73.9 E(32554): 4.2e-13
Smith-Waterman score: 566; 25.6% identity (60.1% similar) in 476 aa overlap (53-499:1-464)
30 40 50 60 70
pF1KB0 PSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLFVGLLLTW----ESGQVLGDQTV
: ::.:. :: : . . . :.:.
CCDS42 MKPPLLVFIVCLL-WLKDSHCAPTWKDKTA
10 20
80 90 100 110 120 130
pF1KB0 SDNELQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTNEERKTLLSNLEEAKKKKEDALN
...:. .:. : ...:...:..:.::.: ..:. ..:. .:.:.:.. ...:..::.
CCDS42 ISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKEKEHTNLMSTLKKCREEKQEALK
30 40 50 60 70 80
140 150 160 170 180 190
pF1KB0 ETRESETKLKELPGVCNETMMALWEECKPCLKQTCMKFYARVCRSGSGLVGRQLEEFLNQ
: . .:.: .: :.. : ::. ::...::..:. .:. . . : ..:.:. .
CCDS42 LLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRIYT-TCQPSWSSVKNKIERFFRK
90 100 110 120 130 140
200 210 220 230 240 250
pF1KB0 SSPFYFWMNGDR------IDSLLENDRQQTHMLDVMQDHFSRASSIIDELFQDRF-FTRE
: : .. : ..:.:.: : :.: :: ::. . .. ::. : :.
CCDS42 IYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDV----FSQLTVDVNSLFNRSFNVFRQ
150 160 170 180 190 200
260 270 280 290 300
pF1KB0 PQDTY------HYLPFSLPHRRPHFF--FPKSRIVRSLMPFSPYEPLNFHAMFQPFLEMI
:. . :.. . .:.:: : : .... . : :: .: : :
CCDS42 MQQEFDQTFQSHFIS-DTDLTEPYFFPAFSKEPMTKADLEQCWDIP-NFFQLFCNFSVSI
210 220 230 240 250 260
310 320 330 340 350
pF1KB0 HEA---------QQAMDIHFHSPAFQHPPTEFIREGDDDRTVCREIRHNSTGCLRMKDQC
.:. . :. .. : .: .:: .: :. .: . :......:
CCDS42 YESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQDRGLCGELDQNLSRCFKFHEKC
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB0 DKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRKYNELLKSYQWKMLNTSSLLEQL
.::. :: :: :. :. ::::...... ...:...:. . .. .:. :.:..
CCDS42 QKCQAHLSEDC----PDVPALHTELDEAIRLVNVSNQQYGQILQMTRKHLEDTAYLVEKM
330 340 350 360 370
420 430 440 450 460 470
pF1KB0 NEQFNWVSRLANLTQGEDQYYLRVTTVAS-HTSDSDVPSGVTEVVVKLFDSDPITVTVPV
::.:::.::: . . . . .: : .. . . . . .... :. .:. .:.
CCDS42 RGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQDETMMTDLSILPSSNFTLKIPL
380 390 400 410 420 430
480 490 500
pF1KB0 EVSRKNPKFMETVAEKALQEYRKKHREE
: : .. .:. :. ::::..... .
CCDS42 EESAESSNFIGYVVAKALQHFKEHFKTW
440 450 460
>>CCDS74187.1 CLUL1 gene_id:27098|Hs108|chr18 (518 aa)
initn: 274 init1: 120 opt: 332 Z-score: 348.1 bits: 74.0 E(32554): 4.6e-13
Smith-Waterman score: 577; 25.1% identity (58.9% similar) in 514 aa overlap (15-499:15-516)
10 20 30 40 50 60
pF1KB0 MQVCSQPQRGCVREQSAINTAPPSAHNAASPGGARGHRVPLTEACKDSRIGGMMKTLLLF
:.... :. . : : . :. . : :.: ::.:
CCDS74 MRTWDYRWSLALVAQTGVHCCNLSSLQPLPPRFKRFSCLSLSSGWDYSNSGNMKPPLLVF
10 20 30 40 50 60
70 80 90 100 110
pF1KB0 VGLLLTW----ESGQVLGDQTVSDNELQEMSNQGSKYVNKEIQNAVNGVKQIKTLIEKTN
. :: : . . . :.:. ...:. .:. : ...:...:..:.::.: ..:. .
CCDS74 IVCLL-WLKDSHCAPTWKDKTAISENLKSFSEVGEIDADEEVKKALTGIKQMKIMMERKE
70 80 90 100 110
120 130 140 150 160 170
pF1KB0 EERKTLLSNLEEAKKKKEDALNETRESETKLKELPGVCNETMMALWEECKPCLKQTCMKF
.:. .:.:.:.. ...:..::. : . .:.: .: :.. : ::. ::...::..
CCDS74 KEHTNLMSTLKKCREEKQEALKLLNEVQEHLEEEERLCRESLADSWGECRSCLENNCMRI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 YARVCRSGSGLVGRQLEEFLNQSSPFYFWMNGDR------IDSLLENDRQQTHMLDVMQD
:. .:. . . : ..:.:. . : : .. : ..:.:.: : :.: ::
CCDS74 YT-TCQPSWSSVKNKIERFFRKIYQFLFPFHEDNEKDLPISEKLIEEDAQLTQMEDV---
180 190 200 210 220 230
240 250 260 270 280
pF1KB0 HFSRASSIIDELFQDRF-FTREPQDTY------HYLPFSLPHRRPHFF--FPKSRIVRSL
::. . .. ::. : :. :. . :.. . .:.:: : : ....
CCDS74 -FSQLTVDVNSLFNRSFNVFRQMQQEFDQTFQSHFIS-DTDLTEPYFFPAFSKEPMTKAD
240 250 260 270 280 290
290 300 310 320 330
pF1KB0 MPFSPYEPLNFHAMFQPFLEMIHEA---------QQAMDIHFHSPAFQHPPTEFIREGDD
. : :: .: : :.:. . :. .. : .: .
CCDS74 LEQCWDIP-NFFQLFCNFSVSIYESVSETITKMLKAIEDLPKQDKAPDHGGLISKMLPGQ
300 310 320 330 340 350
340 350 360 370 380 390
pF1KB0 DRTVCREIRHNSTGCLRMKDQCDKCREILSVDCSTNNPSQAKLRRELDESLQVAERLTRK
:: .: :. .: . :......:.::. :: :: :. :. ::::...... ...
CCDS74 DRGLCGELDQNLSRCFKFHEKCQKCQAHLSEDC----PDVPALHTELDEAIRLVNVSNQQ
360 370 380 390 400
400 410 420 430 440 450
pF1KB0 YNELLKSYQWKMLNTSSLLEQLNEQFNWVSRLANLTQGEDQYYLRVTTVAS-HTSDSDVP
:...:. . .. .:. :.:.. ::.:::.::: . . . . .: : .. .
CCDS74 YGQILQMTRKHLEDTAYLVEKMRGQFGWVSELANQAPETEIIFNSIQVVPRIHEGNISKQ
410 420 430 440 450 460
460 470 480 490 500
pF1KB0 SGVTEVVVKLFDSDPITVTVPVEVSRKNPKFMETVAEKALQEYRKKHREE
. . . .... :. .:. .:.: : .. .:. :. ::::..... .
CCDS74 DETMMTDLSILPSSNFTLKIPLEESAESSNFIGYVVAKALQHFKEHFKTW
470 480 490 500 510
501 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 16:54:30 2016 done: Sat Nov 5 16:54:31 2016
Total Scan time: 3.270 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]