Result of FASTA (omim) for
pF1KB0401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0401, 171 aa
1>>>pF1KB0401 171 - 171 aa - 171 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8617+/-0.000407; mu= 16.0864+/- 0.025
mean_var=90.3794+/-17.919, 0's: 0 Z-trim(113.3): 136 B-trim: 30 in 1/54
Lambda= 0.134909
statistics sampled from 22416 (22567) to 22416 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.265), width: 16
Scan time: 5.230
The best scores are: opt bits E(85289)
NP_001138416 (OMIM: 609211) myosin regulatory ligh ( 172) 1108 225.2 3.9e-59
NP_001138417 (OMIM: 609211) myosin regulatory ligh ( 172) 1108 225.2 3.9e-59
NP_291024 (OMIM: 609211) myosin regulatory light c ( 172) 1108 225.2 3.9e-59
NP_006088 (OMIM: 609905) myosin regulatory light p ( 172) 1072 218.2 5e-57
NP_000423 (OMIM: 160781,608758) myosin regulatory ( 166) 634 133.0 2.3e-31
XP_016863734 (OMIM: 160782) PREDICTED: myosin ligh ( 173) 615 129.3 3e-30
NP_002468 (OMIM: 160782) myosin light chain 5 [Hom ( 173) 615 129.3 3e-30
XP_016863735 (OMIM: 160782) PREDICTED: myosin ligh ( 173) 615 129.3 3e-30
XP_006713949 (OMIM: 160782) PREDICTED: myosin ligh ( 328) 608 128.2 1.2e-29
NP_067046 (OMIM: 613993) myosin regulatory light c ( 175) 559 118.4 5.8e-27
XP_011513766 (OMIM: 613993) PREDICTED: myosin regu ( 208) 492 105.4 5.5e-23
XP_016863737 (OMIM: 160782) PREDICTED: myosin ligh ( 132) 468 100.5 1e-21
XP_016863736 (OMIM: 160782) PREDICTED: myosin ligh ( 132) 468 100.5 1e-21
XP_016867967 (OMIM: 613993) PREDICTED: myosin regu ( 132) 444 95.9 2.6e-20
XP_011513767 (OMIM: 613993) PREDICTED: myosin regu ( 163) 444 96.0 3e-20
NP_001316851 (OMIM: 114183) calmodulin isoform 1 [ ( 149) 401 87.6 9.5e-18
NP_008819 (OMIM: 114180,614916,616247) calmodulin ( 149) 401 87.6 9.5e-18
NP_005175 (OMIM: 114183) calmodulin isoform 1 [Hom ( 149) 401 87.6 9.5e-18
NP_001734 (OMIM: 114182,616249) calmodulin isoform ( 149) 401 87.6 9.5e-18
XP_006720321 (OMIM: 114180,614916,616247) PREDICTE ( 150) 400 87.4 1.1e-17
NP_001292553 (OMIM: 114182,616249) calmodulin isof ( 197) 400 87.5 1.3e-17
NP_005176 (OMIM: 114184) calmodulin-like protein 3 ( 149) 378 83.1 2.1e-16
XP_011513765 (OMIM: 613993) PREDICTED: myosin regu ( 231) 365 80.8 1.6e-15
NP_852667 (OMIM: 609905) myosin regulatory light p ( 118) 360 79.5 2.1e-15
XP_016867968 (OMIM: 613993) PREDICTED: myosin regu ( 99) 320 71.6 4e-13
XP_005249874 (OMIM: 613993) PREDICTED: myosin regu ( 155) 317 71.2 8.1e-13
NP_001316850 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 313 70.3 1.1e-12
NP_001316852 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 313 70.3 1.1e-12
NP_001292554 (OMIM: 114182,616249) calmodulin isof ( 113) 313 70.3 1.1e-12
NP_001292555 (OMIM: 114182,616249) calmodulin isof ( 113) 313 70.3 1.1e-12
NP_001316855 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 313 70.3 1.1e-12
NP_001316854 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 313 70.3 1.1e-12
NP_001316853 (OMIM: 114183) calmodulin isoform 2 [ ( 113) 313 70.3 1.1e-12
NP_004335 (OMIM: 300006) centrin-2 [Homo sapiens] ( 172) 291 66.2 2.9e-11
NP_004057 (OMIM: 603187) centrin-1 [Homo sapiens] ( 172) 282 64.5 9.8e-11
NP_059118 (OMIM: 605183) calmodulin-like protein 5 ( 146) 251 58.4 5.7e-09
NP_003270 (OMIM: 191039) troponin C, skeletal musc ( 160) 248 57.8 9.1e-09
XP_011527333 (OMIM: 191039) PREDICTED: troponin C, ( 145) 245 57.2 1.3e-08
NP_002466 (OMIM: 609930) myosin light chain 6B [Ho ( 208) 246 57.6 1.4e-08
NP_001186558 (OMIM: 609930) myosin light chain 6B ( 208) 246 57.6 1.4e-08
NP_057450 (OMIM: 607314,614899) calcium-binding pr ( 220) 238 56.0 4.3e-08
NP_003271 (OMIM: 191040,611879,613243) troponin C, ( 161) 235 55.3 5.3e-08
NP_524147 (OMIM: 609931) myosin light polypeptide ( 151) 233 54.9 6.7e-08
NP_001305425 (OMIM: 607314,614899) calcium-binding ( 226) 229 54.3 1.5e-07
NP_066299 (OMIM: 609931) myosin light polypeptide ( 151) 226 53.5 1.7e-07
NP_004356 (OMIM: 602907) centrin-3 isoform 2 [Homo ( 167) 222 52.8 3.1e-07
NP_524146 (OMIM: 160780) myosin light chain 1/3, s ( 150) 215 51.4 7.5e-07
NP_619650 (OMIM: 610171) calmodulin-like protein 6 ( 181) 215 51.5 8.5e-07
XP_005244786 (OMIM: 610171) PREDICTED: calmodulin- ( 203) 215 51.5 9.2e-07
NP_524144 (OMIM: 160780) myosin light chain 1/3, s ( 194) 211 50.7 1.5e-06
>>NP_001138416 (OMIM: 609211) myosin regulatory light ch (172 aa)
initn: 1077 init1: 1077 opt: 1108 Z-score: 1182.6 bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)
10 20 30 40 50
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
130 140 150 160 170
>>NP_001138417 (OMIM: 609211) myosin regulatory light ch (172 aa)
initn: 1077 init1: 1077 opt: 1108 Z-score: 1182.6 bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)
10 20 30 40 50
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
130 140 150 160 170
>>NP_291024 (OMIM: 609211) myosin regulatory light chain (172 aa)
initn: 1077 init1: 1077 opt: 1108 Z-score: 1182.6 bits: 225.2 E(85289): 3.9e-59
Smith-Waterman score: 1108; 97.7% identity (98.8% similar) in 172 aa overlap (1-171:1-172)
10 20 30 40 50
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
::::..:::: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 MSSKKAKTKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 LGKNPTDAYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_291 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
130 140 150 160 170
>>NP_006088 (OMIM: 609905) myosin regulatory light polyp (172 aa)
initn: 1042 init1: 1042 opt: 1072 Z-score: 1144.7 bits: 218.2 E(85289): 5e-57
Smith-Waterman score: 1072; 93.0% identity (98.8% similar) in 172 aa overlap (1-171:1-172)
10 20 30 40 50
pF1KB0 MSSKRTKTKT-KKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
:::::.:.:: :::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSSKRAKAKTTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLAS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LGKNPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
::::::::::..::.:::::::::::::::::::::::::::::::::::::::.: :.:
NP_006 LGKNPTDEYLEGMMSEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEASGFIHE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
:.:::::::::::::::::::.::::::::::::::.:::::::::::::::
NP_006 DHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYVEFTRILKHGAKDKDD
130 140 150 160 170
>>NP_000423 (OMIM: 160781,608758) myosin regulatory ligh (166 aa)
initn: 627 init1: 388 opt: 634 Z-score: 684.2 bits: 133.0 E(85289): 2.3e-31
Smith-Waterman score: 634; 57.7% identity (84.7% similar) in 163 aa overlap (9-170:5-166)
10 20 30 40 50 60
pF1KB0 MSSKRTKTKTKKRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASL
:.::: :.::::.::.:.:::::::::...::::::::::.::.: .:.:
NP_000 MAPKKAKKRAGGANSNVFSMFEQTQIQEFKEAFTIMDQNRDGFIDKNDLRDTFAAL
10 20 30 40 50
70 80 90 100 110
pF1KB0 GK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTIQE
:. : .: .: :..:::::::::.:::::::::.:.:::..: ::: :: :. :...
NP_000 GRVNVKNEEIDEMIKEAPGPINFTVFLTMFGEKLKGADPEETILNAFKVFDPEGKGVLKA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 DYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
::.::.:::...::. ::::... : : ::..: ....:. :: ..::
NP_000 DYVREMLTTQAERFSKEEVDQMFAAFPPDVTGNLDYKNLVHIITHG-EEKD
120 130 140 150 160
>>XP_016863734 (OMIM: 160782) PREDICTED: myosin light ch (173 aa)
initn: 586 init1: 341 opt: 615 Z-score: 664.0 bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)
10 20 30 40 50
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
:.:..:: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
:::: : :. ::::..:: :::::::::..:::::.::: :..: ::: .: .. : :
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
130 140 150 160 170
>>NP_002468 (OMIM: 160782) myosin light chain 5 [Homo sa (173 aa)
initn: 586 init1: 341 opt: 615 Z-score: 664.0 bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)
10 20 30 40 50
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
:.:..:: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
NP_002 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
:::: : :. ::::..:: :::::::::..:::::.::: :..: ::: .: .. : :
NP_002 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
NP_002 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
130 140 150 160 170
>>XP_016863735 (OMIM: 160782) PREDICTED: myosin light ch (173 aa)
initn: 586 init1: 341 opt: 615 Z-score: 664.0 bits: 129.3 E(85289): 3e-30
Smith-Waterman score: 615; 53.8% identity (80.3% similar) in 173 aa overlap (1-170:1-173)
10 20 30 40 50
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLA
:.:..:: : : :::.::::. :.:.:::::::::...:::::::::::::.: :
XP_016 MASRKTKKKEGGALRAQRASSNVFSNFEQTQIQEFKEAFTLMDQNRDGFIDKEDLKDTYA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 SLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATGTI
:::: : :. ::::..:: :::::::::..:::::.::: :..: ::: .: .. : :
XP_016 SLGKTNVKDDELDAMLKEASGPINFTMFLNLFGEKLSGTDAEETILNAFKMLDPDGKGKI
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 QEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
...:...:: ...:..: ::::.... : :: ::..: .. .. :: . ..
XP_016 NKEYIKRLLMSQADKMTAEEVDQMFQFASIDVAGNLDYKALSYVITHGEEKEE
130 140 150 160 170
>>XP_006713949 (OMIM: 160782) PREDICTED: myosin light ch (328 aa)
initn: 586 init1: 341 opt: 608 Z-score: 653.4 bits: 128.2 E(85289): 1.2e-29
Smith-Waterman score: 608; 53.5% identity (80.2% similar) in 172 aa overlap (2-170:157-328)
10 20
pF1KB0 MSSKRTKTKTKK--RPQRATSNVFAMFDQSQ
.:..:: : : :::.::::. :.:.:
XP_006 PPSASWPCVHTPDCGPGRTLSSCAERRRPEASRKTKKKEGGALRAQRASSNVFSNFEQTQ
130 140 150 160 170 180
30 40 50 60 70 80
pF1KB0 IQEFKEAFNMIDQNRDGFIDKEDLHDMLASLGK-NPTDEYLDAMMNEAPGPINFTMFLTM
::::::::...:::::::::::::.: ::::: : :. ::::..:: :::::::::..
XP_006 IQEFKEAFTLMDQNRDGFIDKEDLKDTYASLGKTNVKDDELDAMLKEASGPINFTMFLNL
190 200 210 220 230 240
90 100 110 120 130 140
pF1KB0 FGEKLNGTDPEDVIRNAFACFDEEATGTIQEDYLRELLTTMGDRFTDEEVDELYREAPID
:::::.::: :..: ::: .: .. : :...:...:: ...:..: ::::.... : ::
XP_006 FGEKLSGTDAEETILNAFKMLDPDGKGKINKEYIKRLLMSQADKMTAEEVDQMFQFASID
250 260 270 280 290 300
150 160 170
pF1KB0 KKGNFNYIEFTRILKHGAKDKDD
::..: .. .. :: . ..
XP_006 VAGNLDYKALSYVITHGEEKEE
310 320
>>NP_067046 (OMIM: 613993) myosin regulatory light chain (175 aa)
initn: 570 init1: 338 opt: 559 Z-score: 605.0 bits: 118.4 E(85289): 5.8e-27
Smith-Waterman score: 559; 48.6% identity (78.3% similar) in 175 aa overlap (1-170:1-175)
10 20 30 40 50
pF1KB0 MSSKRTKTKTK----KRPQRATSNVFAMFDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDM
:.:... :. : :. ::..::::.::.:.:::::::::. :::::::.: : ::..
NP_067 MASRKAGTRGKVAATKQAQRGSSNVFSMFEQAQIQEFKEAFSCIDQNRDGIICKADLRET
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 LASLGK-NPTDEYLDAMMNEAPGPINFTMFLTMFGEKLNGTDPEDVIRNAFACFDEEATG
..::: . .: ::::..:. ::::::.:::.:::::::::::..: .:: :: . :
NP_067 YSQLGKVSVPEEELDAMLQEGKGPINFTVFLTLFGEKLNGTDPEEAILSAFRMFDPSGKG
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 TIQEDYLRELLTTMGDRFTDEEVDELYREAPIDKKGNFNYIEFTRILKHGAKDKDD
....: ...:: :..:.:. ::.... .:.: ::..: . :. :: . ..
NP_067 VVNKDEFKQLLLTQADKFSPAEVEQMFALTPMDLAGNIDYKSLCYIITHGDEKEE
130 140 150 160 170
171 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:49:41 2016 done: Sat Nov 5 11:49:42 2016
Total Scan time: 5.230 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]