Result of FASTA (ccds) for
pF1KA1966
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1966, 727 aa
1>>>pF1KA1966 727 - 727 aa - 727 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.4365+/-0.00125; mu= -4.3795+/- 0.077
mean_var=466.2360+/-92.145, 0's: 0 Z-trim(114.8): 60 B-trim: 0 in 0/53
Lambda= 0.059398
statistics sampled from 15340 (15385) to 15340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.755), E-opt: 0.2 (0.473), width: 16
Scan time: 4.650
The best scores are: opt bits E(32554)
CCDS33992.1 YTHDC1 gene_id:91746|Hs108|chr4 ( 727) 4947 438.8 1.4e-122
CCDS82929.1 YTHDC1 gene_id:91746|Hs108|chr4 ( 735) 4921 436.5 6.7e-122
CCDS3522.2 YTHDC1 gene_id:91746|Hs108|chr4 ( 709) 3024 274.0 5.7e-73
>>CCDS33992.1 YTHDC1 gene_id:91746|Hs108|chr4 (727 aa)
initn: 4947 init1: 4947 opt: 4947 Z-score: 2314.0 bits: 438.8 E(32554): 1.4e-122
Smith-Waterman score: 4947; 100.0% identity (100.0% similar) in 727 aa overlap (1-727:1-727)
10 20 30 40 50 60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
670 680 690 700 710 720
pF1KA1 ERGRYRR
:::::::
CCDS33 ERGRYRR
>>CCDS82929.1 YTHDC1 gene_id:91746|Hs108|chr4 (735 aa)
initn: 4089 init1: 3857 opt: 4921 Z-score: 2301.9 bits: 436.5 E(32554): 6.7e-122
Smith-Waterman score: 4921; 98.9% identity (98.9% similar) in 735 aa overlap (1-727:1-735)
10 20 30 40 50 60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
490 500 510 520 530 540
550 560 570 580 590
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVD--------RRFSGVRRDVFLNGSYNDY
::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS82 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDSFTNLIPNRRFSGVRRDVFLNGSYNDY
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 VREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VREFHNMGPPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKR
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 VHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VHDYDMRVDDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERL
670 680 690 700 710 720
720
pF1KA1 CDRDRDRGERGRYRR
:::::::::::::::
CCDS82 CDRDRDRGERGRYRR
730
>>CCDS3522.2 YTHDC1 gene_id:91746|Hs108|chr4 (709 aa)
initn: 2860 init1: 2860 opt: 3024 Z-score: 1423.6 bits: 274.0 E(32554): 5.7e-73
Smith-Waterman score: 4793; 97.5% identity (97.5% similar) in 727 aa overlap (1-727:1-709)
10 20 30 40 50 60
pF1KA1 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MAADSREEKDGELNVLDDILTEVPEQDDELYNPESEQDKNEKKGSKRKSDRMESTDTKRQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KPSVHSRQLVSKPLSSSVSNNKRIVSTKGKSATEYKNEEYQRSERNKRLDADRKIRLSSS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ASREPYKNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 SDHETGSSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVDEDGEEEEEEEEEEE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EEEEEEEEEYEQDERDQKEEGNDYDTRSEASDSGSESVSFTDGSVRSGSGTDGSDEKKKE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 RKRARGISPIVFDRSGSSASESYAGSEKKHEKLSSSVRAVRKDQTSKLKYVLQDARFFLI
:::::::::::::::::::::::: ::::::::::::::::::
CCDS35 RKRARGISPIVFDRSGSSASESYA------------------DQTSKLKYVLQDARFFLI
310 320 330 340
370 380 390 400 410 420
pF1KA1 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 KSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESH
350 360 370 380 390 400
430 440 450 460 470 480
pF1KA1 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 HGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEI
410 420 430 440 450 460
490 500 510 520 530 540
pF1KA1 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 ELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHSQPRSRGRPSRREPVRDVGRRRPEDY
470 480 490 500 510 520
550 560 570 580 590 600
pF1KA1 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DIHNSRKKPRIDYPPEFHQRPGYLKDPRYQEVDRRFSGVRRDVFLNGSYNDYVREFHNMG
530 540 550 560 570 580
610 620 630 640 650 660
pF1KA1 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 PPPPWQGMPPYPGMEQPPHHPYYQHHAPPPQAHPPYSGHHPVPHEARYRDKRVHDYDMRV
590 600 610 620 630 640
670 680 690 700 710 720
pF1KA1 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DDFLRRTQAVVSGRRSRPRERDRERERDRPRDNRRDRERDRGRDRERERERLCDRDRDRG
650 660 670 680 690 700
pF1KA1 ERGRYRR
:::::::
CCDS35 ERGRYRR
727 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:19:43 2016 done: Wed Nov 2 22:19:43 2016
Total Scan time: 4.650 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]