FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1887, 1003 aa
  1>>>pF1KA1887 1003 - 1003 aa - 1003 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.7209+/-0.0011; mu= -18.5755+/- 0.067
 mean_var=674.9416+/-139.506, 0's: 0 Z-trim(118.3): 120  B-trim: 0 in 0/55
 Lambda= 0.049368
 statistics sampled from 19141 (19258) to 19141 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.822), E-opt: 0.2 (0.592), width:  16
 Scan time:  5.420

The best scores are:                                      opt bits E(32554)
CCDS8944.1 MBD6 gene_id:114785|Hs108|chr12         (1003) 7087 520.4 7.4e-147


>>CCDS8944.1 MBD6 gene_id:114785|Hs108|chr12              (1003 aa)
 initn: 7087 init1: 7087 opt: 7087  Z-score: 2750.0  bits: 520.4 E(32554): 7.4e-147
Smith-Waterman score: 7087; 100.0% identity (100.0% similar) in 1003 aa overlap (1-1003:1-1003)

               10        20        30        40        50        60
pF1KA1 MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 MNGGNESSGADRAGGPVATSVPIGWQRCVREGAVLYISPSGTELSSLEQTRSYLLSDGTC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 KCGLECPLNVPKVFNFDPLAPVTPGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 KCGLECPLNVPKVFNFDPLAPVTPGGAGVGPASEEDMTKLCNHRRKAVAMATLYRSMETT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 CSHSSPGEGASPQMFHTVSPGPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 CSHSSPGEGASPQMFHTVSPGPPSARPPCRVPPTTPLNGGPGSLPPEPPSVSQAFPTLAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 PGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PGGLFPPRLADPVPSGGSSSPRFLPRGNAPSPAPPPPPAISLNAPSYNWGAALRSSLVPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 DLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 DLGSPPAPHASSSPPSDPPLFHCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 LGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LGPLGGAPTVEGPGAPPFLASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 PSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PSQRRPRRPPTVFRLLEGRGPQTPRRSRPRAPAPVPQPFSLPEPSQPILPSVLSLLGLPT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 PGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PGPSHSDGSFNLLGSDAHLPPPPTLSSGSPPQPRHPIQPSLPGTTSGSLSSVPGAPAPPA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 ASKAPVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 ASKAPVVPSPVLQSPSEGLGMGAGPACPLPPLAGGEAFPFPSPEQGLALSGAGFPGMLGA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 LPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPSLLVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 LPLPLSLGQPPPSPLLNHSLFGVLTGGGGQPPPEPLLPPPGGPGPPLAPGEPEGPSLLVA
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 SLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSGEPFSGLGDLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SLLPPPPSDLLPPPSAPPSNLLASFLPLLALGPTAGDGEGSAEGAGGPSGEPFSGLGDLS
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA1 PLLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVLSAPQPGPPTSSVTTATTDPGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PLLFPPLSAPPTLIALNSALLAATLDPPSGTPPQPCVLSAPQPGPPTSSVTTATTDPGAS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA1 SLGKAPSNSGRPPQLLSPLLGASLLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 SLGKAPSNSGRPPQLLSPLLGASLLGDLSSLTSSPGALPSLLQPPGPLLSGQLGLQLLPG
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA1 GGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GGAPPPLSEASSPLACLLQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGS
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA1 PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSRREPGRLALKWGTRGGFN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 PDPPVPELLTGRGSGKRGRRGGGGLRGINGEARPARGRKPGSRREPGRLALKWGTRGGFN
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA1 GQMERSPRRTHHWQHNGELAEGGAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS89 GQMERSPRRTHHWQHNGELAEGGAEPKDPPPPGPHSEDLKVPPGVVRKSRRGRRRKYNPT
              910       920       930       940       950       960

              970       980       990      1000   
pF1KA1 RNSNSSRQDITLEPSPTARAAVPLPPRARPGRPAKNKRRKLAP
       :::::::::::::::::::::::::::::::::::::::::::
CCDS89 RNSNSSRQDITLEPSPTARAAVPLPPRARPGRPAKNKRRKLAP
              970       980       990      1000   




1003 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:57:53 2016 done: Sat Nov  5 06:57:54 2016
 Total Scan time:  5.420 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]