Result of FASTA (omim) for
pF1KA1861
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1861, 957 aa
1>>>pF1KA1861 957 - 957 aa - 957 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0510+/-0.000508; mu= 18.5452+/- 0.032
mean_var=100.0909+/-20.479, 0's: 0 Z-trim(109.8): 34 B-trim: 82 in 2/50
Lambda= 0.128197
statistics sampled from 18005 (18016) to 18005 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.562), E-opt: 0.2 (0.211), width: 16
Scan time: 12.370
The best scores are: opt bits E(85289)
NP_060137 (OMIM: 616465) syndetin isoform a [Homo ( 964) 6215 1161.2 0
NP_001244927 (OMIM: 616465) syndetin isoform c [Ho ( 934) 6044 1129.6 0
XP_011514697 (OMIM: 616465) PREDICTED: syndetin is ( 775) 5084 952.0 0
XP_011514698 (OMIM: 616465) PREDICTED: syndetin is ( 682) 3971 746.1 1.4e-214
XP_016867901 (OMIM: 616465) PREDICTED: syndetin is ( 576) 3726 700.7 5.4e-201
NP_078829 (OMIM: 616465) syndetin isoform b [Homo ( 327) 1963 374.5 5e-103
>>NP_060137 (OMIM: 616465) syndetin isoform a [Homo sapi (964 aa)
initn: 6215 init1: 6215 opt: 6215 Z-score: 6214.2 bits: 1161.2 E(85289): 0
Smith-Waterman score: 6215; 100.0% identity (100.0% similar) in 957 aa overlap (1-957:8-964)
10 20 30 40 50
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSG
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPI
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 YWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIP
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDK
850 860 870 880 890 900
900 910 920 930 940 950
pF1KA1 EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDID
910 920 930 940 950 960
pF1KA1 RPKR
::::
NP_060 RPKR
>>NP_001244927 (OMIM: 616465) syndetin isoform c [Homo s (934 aa)
initn: 6044 init1: 6044 opt: 6044 Z-score: 6043.5 bits: 1129.6 E(85289): 0
Smith-Waterman score: 6044; 100.0% identity (100.0% similar) in 930 aa overlap (28-957:5-934)
10 20 30 40 50 60
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQVYFSVDSF
:::::::::::::::::::::::::::::::::
NP_001 MLTLEEFRELREQPSDPQAEQELINSIEQVYFSVDSF
10 20 30
70 80 90 100 110 120
pF1KA1 DIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELERVTSLQT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA1 GLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTLQRTDVRL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA1 SEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVALSKICKN
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA1 FDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNTDTKFQKL
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA1 QYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEGSNMIGTE
280 290 300 310 320 330
370 380 390 400 410 420
pF1KA1 ETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIISRLMQVGE
340 350 360 370 380 390
430 440 450 460 470 480
pF1KA1 EFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSILQLHEFK
400 410 420 430 440 450
490 500 510 520 530 540
pF1KA1 FMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLASNGYESD
460 470 480 490 500 510
550 560 570 580 590 600
pF1KA1 EQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLNKVNAPIL
520 530 540 550 560 570
610 620 630 640 650 660
pF1KA1 TNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSLESTGLGL
580 590 600 610 620 630
670 680 690 700 710 720
pF1KA1 SSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTSGDTLYGLA
640 650 660 670 680 690
730 740 750 760 770 780
pF1KA1 ERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKPIYWIVAGK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KA1 ALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRIPLPVSNIL
760 770 780 790 800 810
850 860 870 880 890 900
pF1KA1 WEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 WEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPDKEFVETYI
820 830 840 850 860 870
910 920 930 940 950
pF1KA1 KAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDIDRPKR
880 890 900 910 920 930
>>XP_011514697 (OMIM: 616465) PREDICTED: syndetin isofor (775 aa)
initn: 5084 init1: 5084 opt: 5084 Z-score: 5085.0 bits: 952.0 E(85289): 0
Smith-Waterman score: 5084; 100.0% identity (100.0% similar) in 775 aa overlap (183-957:1-775)
160 170 180 190 200 210
pF1KA1 NQRKRQLLIGLLKSLRTIKTLQRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCI
::::::::::::::::::::::::::::::
XP_011 MLEEEDYPGAIQLCLECQKAASTFKHYSCI
10 20 30
220 230 240 250 260 270
pF1KA1 SELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SELNSKLQDTLEQIEEQLDVALSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQ
40 50 60 70 80 90
280 290 300 310 320 330
pF1KA1 AIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIHNTVFQVVLGYVELCAGNTDTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSY
100 110 120 130 140 150
340 350 360 370 380 390
pF1KA1 YRTMEWHEKHDNEDTASASEGSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YRTMEWHEKHDNEDTASASEGSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYL
160 170 180 190 200 210
400 410 420 430 440 450
pF1KA1 LGTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGTDLSIFKYDDFIFVLDIISRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDE
220 230 240 250 260 270
460 470 480 490 500 510
pF1KA1 LRMFLENETWELCPVKSNFSILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LRMFLENETWELCPVKSNFSILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCS
280 290 300 310 320 330
520 530 540 550 560 570
pF1KA1 GGNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGNPFEIQANHKDEETEDVLASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDG
340 350 360 370 380 390
580 590 600 610 620 630
pF1KA1 PVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVKSVSRETLKSRKKSDYSLNKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFM
400 410 420 430 440 450
640 650 660 670 680 690
pF1KA1 SQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQLFDYYLYAIYTFFGRNDSLESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAA
460 470 480 490 500 510
700 710 720 730 740 750
pF1KA1 EERKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EERKEKVPSPHLSHLVVLTSGDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKK
520 530 540 550 560 570
760 770 780 790 800 810
pF1KA1 PFLQQFYSQTVSTASELRKPIYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PFLQQFYSQTVSTASELRKPIYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDAL
580 590 600 610 620 630
820 830 840 850 860 870
pF1KA1 LKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKEFEQFNRRLNEVSKRVRIPLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQL
640 650 660 670 680 690
880 890 900 910 920 930
pF1KA1 DFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DFQQFLMKLEKLTDIRPIPDKEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVC
700 710 720 730 740 750
940 950
pF1KA1 LGSHINKKARQKLLAAIDDIDRPKR
:::::::::::::::::::::::::
XP_011 LGSHINKKARQKLLAAIDDIDRPKR
760 770
>>XP_011514698 (OMIM: 616465) PREDICTED: syndetin isofor (682 aa)
initn: 3971 init1: 3971 opt: 3971 Z-score: 3973.3 bits: 746.1 E(85289): 1.4e-214
Smith-Waterman score: 3971; 100.0% identity (100.0% similar) in 611 aa overlap (1-611:8-618)
10 20 30 40 50
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDIIS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFSI
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVLA
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSLN
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 KVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDSL
::::::::::::::::::
XP_011 KVNAPILTNTTLNVIRLVDGVSLCCLGWSTVAHLHSLQAPPPGFKPFSCLSLPRSWDYRR
610 620 630 640 650 660
>>XP_016867901 (OMIM: 616465) PREDICTED: syndetin isofor (576 aa)
initn: 3726 init1: 3726 opt: 3726 Z-score: 3729.4 bits: 700.7 E(85289): 5.4e-201
Smith-Waterman score: 3726; 100.0% identity (100.0% similar) in 575 aa overlap (383-957:2-576)
360 370 380 390 400 410
pF1KA1 GSNMIGTEETNFDRGYIKKKLEHGLTRIWQDVQLKVKTYLLGTDLSIFKYDDFIFVLDII
::::::::::::::::::::::::::::::
XP_016 MDVQLKVKTYLLGTDLSIFKYDDFIFVLDII
10 20 30
420 430 440 450 460 470
pF1KA1 SRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRLMQVGEEFCGSKSEVLQESIRKQSVNYFKNYHRTRLDELRMFLENETWELCPVKSNFS
40 50 60 70 80 90
480 490 500 510 520 530
pF1KA1 ILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILQLHEFKFMEQSRSPSVSPSKQPVSTSSKTVTLFEQYCSGGNPFEIQANHKDEETEDVL
100 110 120 130 140 150
540 550 560 570 580 590
pF1KA1 ASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ASNGYESDEQEKSAYQEYDSDSDVPEELKRDYVDEQTGDGPVKSVSRETLKSRKKSDYSL
160 170 180 190 200 210
600 610 620 630 640 650
pF1KA1 NKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NKVNAPILTNTTLNVIRLVGKYMQMMNILKPIAFDVIHFMSQLFDYYLYAIYTFFGRNDS
220 230 240 250 260 270
660 670 680 690 700 710
pF1KA1 LESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LESTGLGLSSSRLRTTLNRIQESLIDLEVSADPTATLTAAEERKEKVPSPHLSHLVVLTS
280 290 300 310 320 330
720 730 740 750 760 770
pF1KA1 GDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDTLYGLAERVVATESLVFLAEQFEFLQPHLDAVMPAVKKPFLQQFYSQTVSTASELRKP
340 350 360 370 380 390
780 790 800 810 820 830
pF1KA1 IYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IYWIVAGKALDYEQMLLLMANVKWDVKEIMSQHNIYVDALLKEFEQFNRRLNEVSKRVRI
400 410 420 430 440 450
840 850 860 870 880 890
pF1KA1 PLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PLPVSNILWEHCIRLANRTIVEGYANVKKCSNEGRALMQLDFQQFLMKLEKLTDIRPIPD
460 470 480 490 500 510
900 910 920 930 940 950
pF1KA1 KEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KEFVETYIKAYYLTENDMERWIKEHREYSTKQLTNLVNVCLGSHINKKARQKLLAAIDDI
520 530 540 550 560 570
pF1KA1 DRPKR
:::::
XP_016 DRPKR
>>NP_078829 (OMIM: 616465) syndetin isoform b [Homo sapi (327 aa)
initn: 1963 init1: 1963 opt: 1963 Z-score: 1970.7 bits: 374.5 E(85289): 5e-103
Smith-Waterman score: 1963; 100.0% identity (100.0% similar) in 307 aa overlap (1-307:8-314)
10 20 30 40 50
pF1KA1 MTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MQKIKSLMTRQGLKSPQESLSDLGAIESLRVPGKEEFRELREQPSDPQAEQELINSIEQV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YFSVDSFDIVKYELEKLPPVLNLQELEAYRDKLKQQQAAVSKKVADLILEKQPAYVKELE
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 RVTSLQTGLQLAAVICTNGRRHLNIAKEGFTQASLGLLANQRKRQLLIGLLKSLRTIKTL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 QRTDVRLSEMLEEEDYPGAIQLCLECQKAASTFKHYSCISELNSKLQDTLEQIEEQLDVA
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 LSKICKNFDINHYTKVQQAYRLLGKTQTAMDQLHMHFTQAIHNTVFQVVLGYVELCAGNT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 DTKFQKLQYKDLCTHVTPDSYIPCLADLCKALWEVMLSYYRTMEWHEKHDNEDTASASEG
::::::::::::::
NP_078 DTKFQKLQYKDLCTVCSDLITIHISLL
310 320
957 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 22:09:24 2016 done: Wed Nov 2 22:09:26 2016
Total Scan time: 12.370 Total Display time: 0.140
Function used was FASTA [36.3.4 Apr, 2011]