Result of FASTA (ccds) for
pF1KA1694
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1694, 773 aa
1>>>pF1KA1694 773 - 773 aa - 773 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9089+/-0.000922; mu= 16.8460+/- 0.055
mean_var=69.8342+/-13.939, 0's: 0 Z-trim(105.8): 37 B-trim: 0 in 0/50
Lambda= 0.153476
statistics sampled from 8594 (8608) to 8594 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.636), E-opt: 0.2 (0.264), width: 16
Scan time: 3.670
The best scores are: opt bits E(32554)
CCDS54044.1 CMIP gene_id:80790|Hs108|chr16 ( 773) 5148 1149.4 0
CCDS54045.1 CMIP gene_id:80790|Hs108|chr16 ( 679) 4478 1001.0 0
>>CCDS54044.1 CMIP gene_id:80790|Hs108|chr16 (773 aa)
initn: 5148 init1: 5148 opt: 5148 Z-score: 6153.5 bits: 1149.4 E(32554): 0
Smith-Waterman score: 5148; 100.0% identity (100.0% similar) in 773 aa overlap (1-773:1-773)
10 20 30 40 50 60
pF1KA1 MDVTSSSGGGGDPRQIEETKPLLGGDVSAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MDVTSSSGGGGDPRQIEETKPLLGGDVSAPEGTKMGAVPCRRALLLCNGMRYKLLQEGDI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 QVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QVCVIRHPRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 SWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SWENAPKYCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 EIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 EIRTLVDMALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 DLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 DLCEFFCKHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAG
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 MEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MEVVKKFIQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 QPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QPCDRKPTLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 GNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 GNDSEPNLIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPI
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 PFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PFPKEALAHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 ELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ELFASMVHILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNND
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 TQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TQLQIISTLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 FGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FGNLENLSLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCE
670 680 690 700 710 720
730 740 750 760 770
pF1KA1 TPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TPVTDAGLLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
730 740 750 760 770
>>CCDS54045.1 CMIP gene_id:80790|Hs108|chr16 (679 aa)
initn: 4478 init1: 4478 opt: 4478 Z-score: 5352.7 bits: 1001.0 E(32554): 0
Smith-Waterman score: 4478; 99.7% identity (99.9% similar) in 676 aa overlap (98-773:4-679)
70 80 90 100 110 120
pF1KA1 PRTFLSKILTSKFLRRWEPHHLTLADNSLASATPTGYMENSVSYSAIEDVQLLSWENAPK
.: :::::::::::::::::::::::::::
CCDS54 MGQAAEPTGYMENSVSYSAIEDVQLLSWENAPK
10 20 30
130 140 150 160 170 180
pF1KA1 YCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 YCLQLTIPGGTVLLQAANSYLRDQWFHSLQWKKKIYKYKKVLSNPSRWEVVLKEIRTLVD
40 50 60 70 80 90
190 200 210 220 230 240
pF1KA1 MALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MALTSPLQDDSINQAPLEIVSKLLSENTNLTTQEHENIIVAIAPLLENNHPPPDLCEFFC
100 110 120 130 140 150
250 260 270 280 290 300
pF1KA1 KHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 KHCRERPRSMVVIEVFTPVVQRILKHNMDFGKCPRLRLFTQEYILALNELNAGMEVVKKF
160 170 180 190 200 210
310 320 330 340 350 360
pF1KA1 IQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 IQSMHGPTGHCPHPRVLPNLVAVCLAAIYSCYEEFINSRDNSPSLKEIRNGCQQPCDRKP
220 230 240 250 260 270
370 380 390 400 410 420
pF1KA1 TLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLPLRLLHPSPDLVSQEATLSEARLKSVVVASSEIHVEVERTSTAKPALTASAGNDSEPN
280 290 300 310 320 330
430 440 450 460 470 480
pF1KA1 LIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LIDCLMVSPACSTMSIELGPQADRTLGCYVEILKLLSDYDDWRPSLASLLQPIPFPKEAL
340 350 360 370 380 390
490 500 510 520 530 540
pF1KA1 AHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 AHEKFTKELKYVIQRFAEDPRQEVHSCLLSVRAGKDGWFQLYSPGGVACDDDGELFASMV
400 410 420 430 440 450
550 560 570 580 590 600
pF1KA1 HILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 HILMGSCYKTKKFLLSLAENKLGPCMLLALRGNQTMVEILCLMLEYNIIDNNDTQLQIIS
460 470 480 490 500 510
610 620 630 640 650 660
pF1KA1 TLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 TLESTDVGKRMYEQLCDRQRELKELQRKGGPTRLTLPSKSTDADLARLLSSGSFGNLENL
520 530 540 550 560 570
670 680 690 700 710 720
pF1KA1 SLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 SLAFTNVTSACAEHLIKLPSLKQLNLWSTQFGDAGLRLLSEHLTMLQVLNLCETPVTDAG
580 590 600 610 620 630
730 740 750 760 770
pF1KA1 LLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LLALSSMKSLCSLNMNSTKLSADTYEDLKAKLPNLKEVDVRYTEAW
640 650 660 670
773 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:44:21 2016 done: Fri Nov 4 01:44:22 2016
Total Scan time: 3.670 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]