FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1667, 708 aa
  1>>>pF1KA1667 708 - 708 aa - 708 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.1846+/-0.000941; mu= 6.7067+/- 0.057
 mean_var=149.5952+/-29.664, 0's: 0 Z-trim(110.3): 17  B-trim: 0 in 0/50
 Lambda= 0.104861
 statistics sampled from 11496 (11502) to 11496 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.705), E-opt: 0.2 (0.353), width:  16
 Scan time:  4.310

The best scores are:                                      opt bits E(32554)
CCDS13835.1 HPS4 gene_id:89781|Hs108|chr22         ( 708) 4727 727.2  2e-209
CCDS46677.1 HPS4 gene_id:89781|Hs108|chr22         ( 703) 4644 714.7 1.2e-205


>>CCDS13835.1 HPS4 gene_id:89781|Hs108|chr22              (708 aa)
 initn: 4727 init1: 4727 opt: 4727  Z-score: 3873.5  bits: 727.2 E(32554): 2e-209
Smith-Waterman score: 4727; 99.3% identity (99.9% similar) in 708 aa overlap (1-708:1-708)

               10        20        30        40        50        60
pF1KA1 MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGGDAPQEHGAALP
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS13 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA1 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA1 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA1 AISSLRPPSAPEMLTQHGAQEQVEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS13 AISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA1 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA1 MNLYTHCVKGLMLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA1 TYNFTYYDRIQSLLMANLPQVATPHDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA
       :::::.::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS13 TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA
              610       620       630       640       650       660

              670       680       690       700        
pF1KA1 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
              670       680       690       700        

>>CCDS46677.1 HPS4 gene_id:89781|Hs108|chr22              (703 aa)
 initn: 4644 init1: 4644 opt: 4644  Z-score: 3805.7  bits: 714.7 E(32554): 1.2e-205
Smith-Waterman score: 4644; 98.9% identity (99.6% similar) in 698 aa overlap (11-708:6-703)

               10        20        30        40        50        60
pF1KA1 MATSTSTEAKSASWWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV
                 : . ::::::::::::::::::::::::::::::::::::::::::::::
CCDS46      MAPLCSLARWNYFFLYDGSKVKEEGDPTRAGICYFYPSQTLLDQQELLCGQIAGV
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KA1 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VRCVSDISDSPPTLVRLRKLKFAIKVDGDYLWVLGCAVELPDVSCKRFLDQLVGFFNFYN
          60        70        80        90       100       110     

              130       140       150       160       170       180
pF1KA1 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 GPVSLAYENCSQEELSTEWDTFIEQILKNTSDLHKIFNSLWNLDQTKVEPLLLLKAARIL
         120       130       140       150       160       170     

              190       200       210       220       230       240
pF1KA1 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGGDAPQEHGAALP
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
CCDS46 QTCQRSPHILAGCILYKGLIVSTQLPPSLTAKVLLHRTAPQEQRLPTGEDAPQEHGAALP
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KA1 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PNVQIIPVFVTKEEAISLHEFPVEQMTRSLASPAGLQDGSAQHHPKGGSTSALKENATGH
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KA1 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VESMAWTTPDPTSPDEACPDGRKENGCLSGHDLESIRPAGLHNSARGEVLGLSSSLGKEL
         300       310       320       330       340       350     

              370       380       390       400       410       420
pF1KA1 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VFLQEELDLSEIHIPEAQEVEMASGHFAFLHVPVPDGRAPYCKASLSASSSLEPTPPEDT
         360       370       380       390       400       410     

              430       440       450       460       470       480
pF1KA1 AISSLRPPSAPEMLTQHGAQEQVEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG
       ::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::
CCDS46 AISSLRPPSAPEMLTQHGAQEQLEDHPGHSSQAPIPRADPLPRRTRRPLLLPRLDPGQRG
         420       430       440       450       460       470     

              490       500       510       520       530       540
pF1KA1 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 NKLPTGEQGLDEDVDGVCESHAAPGLECSSGSANCQGAGPSADGISSRLTPAESCMGLVR
         480       490       500       510       520       530     

              550       560       570       580       590       600
pF1KA1 MNLYTHCVKGLMLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MNLYTHCVKGLVLSLLAEEPLLGDSAAIEEVYHSSLASLNGLEVHLKETLPRDEAASTSS
         540       550       560       570       580       590     

              610       620       630       640       650       660
pF1KA1 TYNFTYYDRIQSLLMANLPQVATPHDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA
       :::::.::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS46 TYNFTHYDRIQSLLMANLPQVATPQDRRFLQAVSLMHSEFAQLPALYEMTVRNASTAVYA
         600       610       620       630       640       650     

              670       680       690       700        
pF1KA1 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
       ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 CCNPIQETYFQQLAPAARSSGFPNPQDGAFSLSGKAKQKLLKHGVNLL
         660       670       680       690       700   




708 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 01:42:00 2016 done: Fri Nov  4 01:42:00 2016
 Total Scan time:  4.310 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]