FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA1645, 327 aa
  1>>>pF1KA1645 327 - 327 aa - 327 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6558+/-0.000738; mu= 10.5879+/- 0.044
 mean_var=121.4626+/-25.538, 0's: 0 Z-trim(112.6): 75  B-trim: 687 in 1/51
 Lambda= 0.116373
 statistics sampled from 13217 (13299) to 13217 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.409), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS13768.1 GNB1L gene_id:54584|Hs108|chr22        ( 327) 2279 393.2 1.5e-109


>>CCDS13768.1 GNB1L gene_id:54584|Hs108|chr22             (327 aa)
 initn: 2279 init1: 2279 opt: 2279  Z-score: 2080.3  bits: 393.2 E(32554): 1.5e-109
Smith-Waterman score: 2279; 100.0% identity (100.0% similar) in 327 aa overlap (1-327:1-327)

               10        20        30        40        50        60
pF1KA1 MTAPCPPPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTAPCPPPPPDPQFVLRGTQSPVHALHFCEGAQAQGRPLLFSGSQSGLVHIWSLQTRRAV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA1 TTLDGHGGQCVTWLQTLPQGRQLLSQGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TTLDGHGGQCVTWLQTLPQGRQLLSQGRDLKLCLWDLAEGRSAVVDSVCLESVGFCRSSI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA1 LAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LAGGQPRWTLAVPGRGSDEVQILEMPSKTSVCALKPKADAKLGMPMCLRLWQADCSSRPL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA1 LLAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLAGYEDGSVVLWDVSEQKVCSRIACHEEPVMDLDFDSQKARGISGSAGKALAVWSLDWQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA1 QALQVRGTHELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 QALQVRGTHELTNPGIAEVTIRPDRKILATAGWDHRIRVFHWRTMQPLAVLAFHSAAVQC
              250       260       270       280       290       300

              310       320       
pF1KA1 VAFTADGLLAAGSKDQRISLWSLYPRA
       :::::::::::::::::::::::::::
CCDS13 VAFTADGLLAAGSKDQRISLWSLYPRA
              310       320       




327 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Wed Nov  2 21:36:05 2016 done: Wed Nov  2 21:36:06 2016
 Total Scan time:  1.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]