Result of FASTA (ccds) for
pF1KA1507
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1507, 922 aa
1>>>pF1KA1507 922 - 922 aa - 922 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6078+/-0.000964; mu= 20.3460+/- 0.058
mean_var=88.1984+/-17.587, 0's: 0 Z-trim(106.5): 22 B-trim: 7 in 1/50
Lambda= 0.136566
statistics sampled from 9040 (9048) to 9040 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.654), E-opt: 0.2 (0.278), width: 16
Scan time: 4.090
The best scores are: opt bits E(32554)
CCDS47577.1 URGCP gene_id:55665|Hs108|chr7 ( 922) 6210 1234.3 0
CCDS47578.1 URGCP gene_id:55665|Hs108|chr7 ( 931) 6183 1229.0 0
CCDS43572.1 URGCP gene_id:55665|Hs108|chr7 ( 888) 5989 1190.8 0
CCDS3935.1 CARD6 gene_id:84674|Hs108|chr5 (1037) 708 150.4 1.7e-35
CCDS64632.1 MRPS24 gene_id:100534592|Hs108|chr7 ( 110) 400 88.9 5.6e-18
>>CCDS47577.1 URGCP gene_id:55665|Hs108|chr7 (922 aa)
initn: 6210 init1: 6210 opt: 6210 Z-score: 6610.0 bits: 1234.3 E(32554): 0
Smith-Waterman score: 6210; 100.0% identity (100.0% similar) in 922 aa overlap (1-922:1-922)
10 20 30 40 50 60
pF1KA1 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 RNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLCA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 LLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 FREDSVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNLGTNAREISD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FREDSVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNLGTNAREISD
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 GLVEISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GLVEISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKE
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 YKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 YKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 RIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKIKDSDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKIKDSDAY
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 RRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHDPSSGVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHDPSSGVQ
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 EFISGISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EFISGISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPE
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 PLGVEHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PLGVEHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLS
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 MPVRWVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATGKSCGPRGAF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MPVRWVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATGKSCGPRGAF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 MQLITVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMGLSNVTVISL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MQLITVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMGLSNVTVISL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 AETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLDPPGDLSRAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLDPPGDLSRAA
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 AQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLEN
850 860 870 880 890 900
910 920
pF1KA1 IRNGLSNQNKNIQQLIELVRRL
::::::::::::::::::::::
CCDS47 IRNGLSNQNKNIQQLIELVRRL
910 920
>>CCDS47578.1 URGCP gene_id:55665|Hs108|chr7 (931 aa)
initn: 6183 init1: 6183 opt: 6183 Z-score: 6581.2 bits: 1229.0 E(32554): 0
Smith-Waterman score: 6183; 100.0% identity (100.0% similar) in 918 aa overlap (5-922:14-931)
10 20 30 40 50
pF1KA1 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEA
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MASPGIEVELLGKGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEA
10 20 30 40 50 60
60 70 80 90 100 110
pF1KA1 QDNDFPTVERSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QDNDFPTVERSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLR
70 80 90 100 110 120
120 130 140 150 160 170
pF1KA1 KLQALNADARNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KLQALNADARNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KA1 VNPLDLLCALLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VNPLDLLCALLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWW
190 200 210 220 230 240
240 250 260 270 280 290
pF1KA1 SQPPRGMGSFREDSVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQPPRGMGSFREDSVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KA1 GTNAREISDGLVEISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GTNAREISDGLVEISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KA1 LTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LTDNISKKEYKLLYSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVS
370 380 390 400 410 420
420 430 440 450 460 470
pF1KA1 STDSDSFVKRIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 STDSDSFVKRIRAIVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERIT
430 440 450 460 470 480
480 490 500 510 520 530
pF1KA1 RKIKDSDAYRRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RKIKDSDAYRRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQN
490 500 510 520 530 540
540 550 560 570 580 590
pF1KA1 GHDPSSGVQEFISGISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 GHDPSSGVQEFISGISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTT
550 560 570 580 590 600
600 610 620 630 640 650
pF1KA1 DVGEPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DVGEPLWPEPLGVEHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPL
610 620 630 640 650 660
660 670 680 690 700 710
pF1KA1 ELIDGSTLSMPVRWVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ELIDGSTLSMPVRWVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATG
670 680 690 700 710 720
720 730 740 750 760 770
pF1KA1 KSCGPRGAFMQLITVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 KSCGPRGAFMQLITVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMG
730 740 750 760 770 780
780 790 800 810 820 830
pF1KA1 LSNVTVISLAETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 LSNVTVISLAETKDIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLD
790 800 810 820 830 840
840 850 860 870 880 890
pF1KA1 PPGDLSRAAAQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PPGDLSRAAAQMEKQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIF
850 860 870 880 890 900
900 910 920
pF1KA1 ELKRCLLENIRNGLSNQNKNIQQLIELVRRL
:::::::::::::::::::::::::::::::
CCDS47 ELKRCLLENIRNGLSNQNKNIQQLIELVRRL
910 920 930
>>CCDS43572.1 URGCP gene_id:55665|Hs108|chr7 (888 aa)
initn: 5989 init1: 5989 opt: 5989 Z-score: 6374.9 bits: 1190.8 E(32554): 0
Smith-Waterman score: 5989; 100.0% identity (100.0% similar) in 888 aa overlap (35-922:1-888)
10 20 30 40 50 60
pF1KA1 GHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVERSRL
::::::::::::::::::::::::::::::
CCDS43 MEGDDCEFRYGDGTNEAQDNDFPTVERSRL
10 20 30
70 80 90 100 110 120
pF1KA1 QEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADARNTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADARNTT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KA1 MVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLCALLLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLCALLLS
100 110 120 130 140 150
190 200 210 220 230 240
pF1KA1 SDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGSFRED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMGSFRED
160 170 180 190 200 210
250 260 270 280 290 300
pF1KA1 SVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNLGTNAREISDGLVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 SVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGHRQWDCFWHRDLNLGTNAREISDGLVE
220 230 240 250 260 270
310 320 330 340 350 360
pF1KA1 ISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKEYKLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 ISWFFPSGREDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNISKKEYKLL
280 290 300 310 320 330
370 380 390 400 410 420
pF1KA1 YSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVKRIRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 YSMKESTTKYYFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDSDSFVKRIRA
340 350 360 370 380 390
430 440 450 460 470 480
pF1KA1 IVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKIKDSDAYRRDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 IVGNVLRAPCRRVSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKIKDSDAYRRDE
400 410 420 430 440 450
490 500 510 520 530 540
pF1KA1 LRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHDPSSGVQEFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 LRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHDPSSGVQEFIS
460 470 480 490 500 510
550 560 570 580 590 600
pF1KA1 GISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPEPLGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 GISSPSLSEKQYFLRWMEWGLARVAQPRLRQPPETLLTLRPKHGGTTDVGEPLWPEPLGV
520 530 540 550 560 570
610 620 630 640 650 660
pF1KA1 EHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLSMPVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 EHFLREMGQFYEAESCLVEAGRLPAGQRRFAHFPGLASELLLTGLPLELIDGSTLSMPVR
580 590 600 610 620 630
670 680 690 700 710 720
pF1KA1 WVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATGKSCGPRGAFMQLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 WVTGLLKELHVRLERRSRLVVLSTVGVPGTGKSTLLNTMFGLRFATGKSCGPRGAFMQLI
640 650 660 670 680 690
730 740 750 760 770 780
pF1KA1 TVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMGLSNVTVISLAETK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 TVAEGFSQDLGCDHILVIDSGGLIGGALTSAGDRFELEASLATLLMGLSNVTVISLAETK
700 710 720 730 740 750
790 800 810 820 830 840
pF1KA1 DIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLDPPGDLSRAAAQME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 DIPAAILHAFLRLEKTGHMPNYQFVYQNLHDVSVPGPRPRDKRQLLDPPGDLSRAAAQME
760 770 780 790 800 810
850 860 870 880 890 900
pF1KA1 KQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLENIRNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 KQGDGFRALAGLAFCDPEKQHIWHIPGLWHGAPPMAAVSLAYSEAIFELKRCLLENIRNG
820 830 840 850 860 870
910 920
pF1KA1 LSNQNKNIQQLIELVRRL
::::::::::::::::::
CCDS43 LSNQNKNIQQLIELVRRL
880
>>CCDS3935.1 CARD6 gene_id:84674|Hs108|chr5 (1037 aa)
initn: 693 init1: 298 opt: 708 Z-score: 750.7 bits: 150.4 E(32554): 1.7e-35
Smith-Waterman score: 784; 35.2% identity (64.1% similar) in 440 aa overlap (31-464:251-668)
10 20 30 40 50 60
pF1KA1 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVE
: :. :.. .. .. . .... ..:
CCDS39 PEDAEATVEEEVYDDPEHVGYDGEEDFENSETTEFSGEEPSYEGSETSLSLEEEQEKSIE
230 240 250 260 270 280
70 80 90 100 110
pF1KA1 RSRLQEMLSLLGLETYQVQKLSLQDSL-QISFDSMKNWAPQVPKDLPWNFLRKLQALNAD
. . :: :. . .:. : : . :.:.: .:.:. : :: :::: :.:: ..
CCDS39 ERKKVFKDVLLCLNMDRSRKV-LPDFVKQFSLDRGCKWTPESPGDLAWNFLMKVQARDVT
290 300 310 320 330
120 130 140 150 160 170
pF1KA1 ARNTTMVLDVLPDARPVEKESQMEEEIIYWDPADDLAADIYSFSELPTPDTPVNPLDLLC
::.. . :: . : .:: : . .. :. .: .::::.::
CCDS39 ARDSILSHKVLDE-----------------DSKEDLLAGVENL-EIRDIQT-INPLDVLC
340 350 360 370 380
180 190 200 210 220 230
pF1KA1 ALLLSSDSFLQQEIALKMALCQFALPLVLPDSENHYHTFLLWAMRGIVRTWWSQPPRGMG
: .: ::: ::... .: :::::::.:::.::. ..: ::. ::. .: :
CCDS39 ATMLCSDSSLQRQVMSNMYQCQFALPLLLPDAENNKSILMLGAMKDIVKKQSTQFSGGPT
390 400 410 420 430 440
240 250 260 270 280 290
pF1KA1 SFREDSVVLSRAPAFAFVRMDVSSNSKSQLLNAVLSPGH-RQWDCFWHRDLNLGTNAREI
: ..: . :...:::. : :::..::..:::.. . : :.:: : . :.:
CCDS39 EDTEKFLTLMKMPVISFVRLGYCSFSKSRILNTLLSPAQLKLHKIFLHQDLPLLVLPRQI
450 460 470 480 490 500
300 310 320 330 340 350
pF1KA1 SDGLVEISWFFPSG--REDLDIFPEPVAFLNLRGDIGSHWLQFKLLTEISSAVFILTDNI
:::::::.: ::.. :.. .: .:::. ::::.. : : :: .: :.:::::..:: .
CCDS39 SDGLVEITWCFPDSDDRKENPFFQKPVALANLRGNLESFWTQFGFLMEVSSAVFFFTDCL
510 520 530 540 550 560
360 370 380 390 400 410
pF1KA1 SKKEYKLLYSMKESTTKY-YFILSPYRGKRNTNLRFLNKLIPVLKIDHSHVLVKVSSTDS
..::. ::. . :.. . ::.:: ..... . ....... :: . . .. :
CCDS39 GEKEWDLLMFLGEAAIERCYFVLSS-QARESEEAQIFQRILN-LKPAQLLFWERGDAGDR
570 580 590 600 610
420 430 440 450 460 470
pF1KA1 DSFVKRIRAIVGNVLRAPCRR-VSVEDMAHAARKLGLKVDEDCEECQKAKDRMERITRKI
. .. ..: . .:. . : : ::::::: ::.::..:::: :. :. .
CCDS39 RKNMEGLQAALQEVMFSSCLRCVSVEDMAALARELGIQVDEDFENTQRIQVSSGENMAGT
620 630 640 650 660 670
480 490 500 510 520 530
pF1KA1 KDSDAYRRDELRLQGDPWRKAAQVEKEFCQLQWAVDPPEKHRAELRRRLLELRMQQNGHD
CCDS39 AEGEGQQRHSQLKSSSKSQALMPIQEPGTQCELSQNLQNLYGTPVFRPVLENSWLFPTRI
680 690 700 710 720 730
>>CCDS64632.1 MRPS24 gene_id:100534592|Hs108|chr7 (110 aa)
initn: 429 init1: 400 opt: 400 Z-score: 436.2 bits: 88.9 E(32554): 5.6e-18
Smith-Waterman score: 400; 100.0% identity (100.0% similar) in 58 aa overlap (1-58:1-58)
10 20 30 40 50 60
pF1KA1 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MASPGHSDLGEVAPEIKASERRTAVAIADLEWREMEGDDCEFRYGDGTNEAQDNDFPTGA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RSRLQEMLSLLGLETYQVQKLSLQDSLQISFDSMKNWAPQVPKDLPWNFLRKLQALNADA
CCDS64 VLEPRAALRLARPAHLPGLRQEPGGPSTRKQGGQAGDLRGGTRAALHRPP
70 80 90 100 110
922 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Wed Nov 2 21:21:25 2016 done: Wed Nov 2 21:21:25 2016
Total Scan time: 4.090 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]