Result of FASTA (ccds) for
pF1KA1408
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1408, 1272 aa
1>>>pF1KA1408 1272 - 1272 aa - 1272 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.2823+/-0.00143; mu= -3.2729+/- 0.086
mean_var=450.5534+/-89.148, 0's: 0 Z-trim(111.3): 47 B-trim: 0 in 0/52
Lambda= 0.060423
statistics sampled from 12257 (12277) to 12257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.377), width: 16
Scan time: 4.510
The best scores are: opt bits E(32554)
CCDS7086.1 UPF2 gene_id:26019|Hs108|chr10 (1272) 8439 751.8 2.6e-216
>>CCDS7086.1 UPF2 gene_id:26019|Hs108|chr10 (1272 aa)
initn: 8439 init1: 8439 opt: 8439 Z-score: 3996.9 bits: 751.8 E(32554): 2.6e-216
Smith-Waterman score: 8439; 100.0% identity (100.0% similar) in 1272 aa overlap (1-1272:1-1272)
10 20 30 40 50 60
pF1KA1 MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MPAERKKPASMEEKDSLPNNKEKDCSERRTVSSKERPKDDIKLTAKKEVSKAPEDKKKRL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EDDKRKKEDKERKKKDEEKVKAEEESKKKEEEEKKKHQEEERKKQEEQAKRQQEEEAAAQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 MKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MKEKEESIQLHQEAWERHHLRKELRSKNQNAPDSRPEENFFSRLDSSLKKNTAFVKKLKT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 ITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ITEQQRDSLSHDFNGLNLSKYIAEAVASIVEAKLKISDVNCAVHLCSLFHQRYADFAPSL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 LQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 LQVWKKHFEARKEEKTPNITKLRTDLRFIAELTIVGIFTDKEGLSLIYEQLKNIINADRE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 SHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 SHTHVSVVISFCRHCGDDIAGLVPRKVKSAAEKFNLSFPPSEIISPEKQQPFQNLLKEYF
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 TSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 TSLTKHLKRDHRELQNTERQNRRILHSKGELSEDRHKQYEEFAMSYQKLLANSQSLADLL
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DENMPDLPQDKPTPEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENLIDLKAFVPA
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 ILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ILFKDNEKSCQNKESNKDDTKEAKESKENKEVSSPDDLELELENLEINDDTLELEGGDEA
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 EDLTKKLLDEQEQEDEEASTGSHLKLIVDAFLQQLPNCVNRDLIDKAAMDFCMNMNTKAN
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RKKLVRALFIVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLRGDFRFHVRKKDQINI
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 ETKNKTVRFIGELTKFKMFTKNDTLHCLKMLLSDFSHHHIEMACTLLETCGRFLFRSPES
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 HLRTSVLLEQMMRKKQAMHLDARYVTMVENAYYYCNPPPAEKTVKKKRPPLQEYVRKLLY
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA1 KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 KDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVANLLAGLVLYQED
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA1 VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFG
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA1 VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLE
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA1 VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 VWTKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLIKLGLVNDKDSK
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA1 DSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DSMTEGENLEEDEEEEEGGAETEEQSGNESEVNEPEEEEGSDNDDDEGEEEEEENTDYLT
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA1 DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DSNKENETDEENTEVMIKGGGLKHVPCVEDEDFIQALDKMMLENLQQRSGESVKVHQLDV
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA1 AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 AIPLHLKSQLRKGPPLGGGEGEAESADTMPFVMLTRKGNKQQFKILNVPMSSQLAANHWN
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA1 QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 QQQAEQEERMRMKKLTLDINERQEQEDYQEMLQSLAQRPAPANTNRERRPRYQHPKGAPN
1210 1220 1230 1240 1250 1260
1270
pF1KA1 ADLIFKTGGRRR
::::::::::::
CCDS70 ADLIFKTGGRRR
1270
1272 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:33:34 2016 done: Fri Nov 4 01:33:35 2016
Total Scan time: 4.510 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]