Result of FASTA (omim) for
pF1KA1401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1401, 804 aa
1>>>pF1KA1401 804 - 804 aa - 804 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0175+/-0.000397; mu= 12.9734+/- 0.025
mean_var=134.9769+/-26.851, 0's: 0 Z-trim(116.0): 44 B-trim: 0 in 0/57
Lambda= 0.110394
statistics sampled from 26826 (26863) to 26826 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.315), width: 16
Scan time: 11.680
The best scores are: opt bits E(85289)
NP_060598 (OMIM: 611214) pre-rRNA-processing prote ( 804) 5415 874.7 0
XP_011538705 (OMIM: 107600,611448) PREDICTED: ribo ( 871) 397 75.5 1.1e-12
XP_011538704 (OMIM: 107600,611448) PREDICTED: ribo (1282) 397 75.6 1.5e-12
NP_055568 (OMIM: 107600,611448) ribosome biogenesi (1282) 397 75.6 1.5e-12
XP_005271903 (OMIM: 107600,611448) PREDICTED: ribo (1282) 397 75.6 1.5e-12
XP_005271905 (OMIM: 107600,611448) PREDICTED: ribo (1219) 279 56.8 6.5e-07
>>NP_060598 (OMIM: 611214) pre-rRNA-processing protein T (804 aa)
initn: 5415 init1: 5415 opt: 5415 Z-score: 4668.3 bits: 874.7 E(85289): 0
Smith-Waterman score: 5415; 99.9% identity (99.9% similar) in 804 aa overlap (1-804:1-804)
10 20 30 40 50 60
pF1KA1 MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 NFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 GLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 GLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 QIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 QIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 YDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 YDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 EEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 FKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 FKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 DPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 EDVLWFKPVELRTKWGWRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYD
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_060 EDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYD
730 740 750 760 770 780
790 800
pF1KA1 PYVPEPVPWLKSEISSTVPQGGME
::::::::::::::::::::::::
NP_060 PYVPEPVPWLKSEISSTVPQGGME
790 800
>>XP_011538705 (OMIM: 107600,611448) PREDICTED: ribosome (871 aa)
initn: 460 init1: 165 opt: 397 Z-score: 348.7 bits: 75.5 E(85289): 1.1e-12
Smith-Waterman score: 399; 22.8% identity (54.5% similar) in 486 aa overlap (332-781:225-701)
310 320 330 340 350 360
pF1KA1 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
: ..:.:. :: . . ..:. ...
XP_011 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
200 210 220 230 240
370 380 390 400 410
pF1KA1 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
: : . . :. ::.... . ..:. :: . . : : ::
XP_011 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
250 260 270 280 290 300
420 430 440 450
pF1KA1 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
.. : ... :... :. : .: . :: :.. .. . :
XP_011 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
310 320 330 340 350 360
460 470 480 490 500 510
pF1KA1 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
XP_011 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
370 380 390 400 410 420
520 530 540 550 560
pF1KA1 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
XP_011 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
430 440 450 460 470 480
570 580 590 600 610 620
pF1KA1 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
XP_011 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
490 500 510 520 530 540
630 640 650 660 670 680
pF1KA1 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
XP_011 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
550 560 570 580 590 600
690 700 710 720 730 740
pF1KA1 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
XP_011 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
610 620 630 640 650 660
750 760 770 780 790 800
pF1KA1 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
. .: .. ::. :: .: :.: . : :.:
XP_011 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
670 680 690 700 710 720
XP_011 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
730 740 750 760 770 780
>>XP_011538704 (OMIM: 107600,611448) PREDICTED: ribosome (1282 aa)
initn: 489 init1: 165 opt: 397 Z-score: 346.3 bits: 75.6 E(85289): 1.5e-12
Smith-Waterman score: 399; 22.8% identity (54.5% similar) in 486 aa overlap (332-781:636-1112)
310 320 330 340 350 360
pF1KA1 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
: ..:.:. :: . . ..:. ...
XP_011 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
610 620 630 640 650
370 380 390 400 410
pF1KA1 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
: : . . :. ::.... . ..:. :: . . : : ::
XP_011 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
660 670 680 690 700 710
420 430 440 450
pF1KA1 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
.. : ... :... :. : .: . :: :.. .. . :
XP_011 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
720 730 740 750 760 770
460 470 480 490 500 510
pF1KA1 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
XP_011 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
780 790 800 810 820 830
520 530 540 550 560
pF1KA1 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
XP_011 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
840 850 860 870 880 890
570 580 590 600 610 620
pF1KA1 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
XP_011 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
900 910 920 930 940 950
630 640 650 660 670 680
pF1KA1 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
XP_011 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
960 970 980 990 1000 1010
690 700 710 720 730 740
pF1KA1 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
XP_011 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
1020 1030 1040 1050 1060 1070
750 760 770 780 790 800
pF1KA1 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
. .: .. ::. :: .: :.: . : :.:
XP_011 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
1080 1090 1100 1110 1120 1130
XP_011 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
1140 1150 1160 1170 1180 1190
>>NP_055568 (OMIM: 107600,611448) ribosome biogenesis pr (1282 aa)
initn: 489 init1: 165 opt: 397 Z-score: 346.3 bits: 75.6 E(85289): 1.5e-12
Smith-Waterman score: 399; 22.8% identity (54.5% similar) in 486 aa overlap (332-781:636-1112)
310 320 330 340 350 360
pF1KA1 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
: ..:.:. :: . . ..:. ...
NP_055 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
610 620 630 640 650
370 380 390 400 410
pF1KA1 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
: : . . :. ::.... . ..:. :: . . : : ::
NP_055 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
660 670 680 690 700 710
420 430 440 450
pF1KA1 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
.. : ... :... :. : .: . :: :.. .. . :
NP_055 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
720 730 740 750 760 770
460 470 480 490 500 510
pF1KA1 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
NP_055 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
780 790 800 810 820 830
520 530 540 550 560
pF1KA1 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
NP_055 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
840 850 860 870 880 890
570 580 590 600 610 620
pF1KA1 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
NP_055 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
900 910 920 930 940 950
630 640 650 660 670 680
pF1KA1 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
NP_055 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
960 970 980 990 1000 1010
690 700 710 720 730 740
pF1KA1 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
NP_055 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
1020 1030 1040 1050 1060 1070
750 760 770 780 790 800
pF1KA1 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
. .: .. ::. :: .: :.: . : :.:
NP_055 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
1080 1090 1100 1110 1120 1130
NP_055 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
1140 1150 1160 1170 1180 1190
>>XP_005271903 (OMIM: 107600,611448) PREDICTED: ribosome (1282 aa)
initn: 489 init1: 165 opt: 397 Z-score: 346.3 bits: 75.6 E(85289): 1.5e-12
Smith-Waterman score: 399; 22.8% identity (54.5% similar) in 486 aa overlap (332-781:636-1112)
310 320 330 340 350 360
pF1KA1 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
: ..:.:. :: . . ..:. ...
XP_005 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
610 620 630 640 650
370 380 390 400 410
pF1KA1 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
: : . . :. ::.... . ..:. :: . . : : ::
XP_005 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
660 670 680 690 700 710
420 430 440 450
pF1KA1 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
.. : ... :... :. : .: . :: :.. .. . :
XP_005 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
720 730 740 750 760 770
460 470 480 490 500 510
pF1KA1 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
XP_005 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
780 790 800 810 820 830
520 530 540 550 560
pF1KA1 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
XP_005 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
840 850 860 870 880 890
570 580 590 600 610 620
pF1KA1 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
XP_005 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
900 910 920 930 940 950
630 640 650 660 670 680
pF1KA1 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
XP_005 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
960 970 980 990 1000 1010
690 700 710 720 730 740
pF1KA1 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
XP_005 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
1020 1030 1040 1050 1060 1070
750 760 770 780 790 800
pF1KA1 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
. .: .. ::. :: .: :.: . : :.:
XP_005 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
1080 1090 1100 1110 1120 1130
XP_005 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
1140 1150 1160 1170 1180 1190
>>XP_005271905 (OMIM: 107600,611448) PREDICTED: ribosome (1219 aa)
initn: 425 init1: 141 opt: 279 Z-score: 245.1 bits: 56.8 E(85289): 6.5e-07
Smith-Waterman score: 283; 22.2% identity (53.6% similar) in 478 aa overlap (325-781:584-1049)
300 310 320 330 340 350
pF1KA1 GDFQMKQIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQES
: :. :.. :. ::. .. . . ...:
XP_005 ANCQSDRVNLEKSLLMKKAALPTFDSGHCTAEEVFASE--DESEESSSLSAEEEDSENEE
560 570 580 590 600 610
360 370 380 390 400
pF1KA1 LQAEVIPDPME---GEQTWPTE--EELSEAKDFLKESSKVVKKVPKGTSSYQA-EWILDG
. . : . :.. : . .: :. ...::: .. . . : .: :
XP_005 AIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLKEEEDYKEENNDSKETSGALKWKEDL
620 630 640 650 660 670
410 420 430 440 450 460
pF1KA1 GSQSGGEGDEYEYDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAE
:....:. . . . . . :..:::.. .: . . :.. ..:.
XP_005 -SRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRVNQPDRECKHKAD
680 690 700 710 720 730
470 480 490 500 510 520
pF1KA1 AKMLEKYKQERLEEMFPDEV-DTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDY---
. .. : .. .:: .. :: . ... . . .. : :.: :.
XP_005 SLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKD--AAKVLAED--EELYGDFEDL
740 750 760 770 780
530 540 550 560 570
pF1KA1 --ARIFQFQNFTNTR-KSIFKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFR----QGT
. . . .. ::. ..: :::.: :.. : :... .. : : .:
XP_005 ETGDVHKGKSGPNTQNEDIEKEVKE-EIDPDEEESAKKKHLDK-KRKLKEMFDAEYDEGE
790 800 810 820 830 840
580 590 600 610 620 630
pF1KA1 PLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADK
.: . ::.. .: ... . .:... .:: :.:::.. ::. . .
XP_005 STYFDDLKGEMQKQA--QMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGR
850 860 870 880 890 900
640 650 660 670 680 690
pF1KA1 HKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMSVDPDRMVI
..: .. : :. ..::: : .. .: :. .:. . ::: ....: . ..
XP_005 QRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLDLDKSIKIV
910 920 930 940 950 960
700 710 720 730 740 750
pF1KA1 KRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-GTHGHMKC
:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. : . .: ..
XP_005 KKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRA
970 980 990 1000 1010 1020
760 770 780 790 800
pF1KA1 SFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
::. :: .: :.: . : :.:
XP_005 SFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLRLAHGVRLK
1030 1040 1050 1060 1070 1080
804 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:32:12 2016 done: Fri Nov 4 01:32:14 2016
Total Scan time: 11.680 Total Display time: 0.110
Function used was FASTA [36.3.4 Apr, 2011]