Result of FASTA (ccds) for
pF1KA1401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA1401, 804 aa
1>>>pF1KA1401 804 - 804 aa - 804 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9510+/-0.000972; mu= 13.3705+/- 0.058
mean_var=117.5743+/-23.743, 0's: 0 Z-trim(108.9): 37 B-trim: 417 in 2/52
Lambda= 0.118282
statistics sampled from 10467 (10494) to 10467 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.676), E-opt: 0.2 (0.322), width: 16
Scan time: 3.920
The best scores are: opt bits E(32554)
CCDS32525.1 TSR1 gene_id:55720|Hs108|chr17 ( 804) 5415 935.6 0
CCDS7199.1 BMS1 gene_id:9790|Hs108|chr10 (1282) 397 79.4 4.2e-14
>>CCDS32525.1 TSR1 gene_id:55720|Hs108|chr17 (804 aa)
initn: 5415 init1: 5415 opt: 5415 Z-score: 4997.5 bits: 935.6 E(32554): 0
Smith-Waterman score: 5415; 99.9% identity (99.9% similar) in 804 aa overlap (1-804:1-804)
10 20 30 40 50 60
pF1KA1 MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAHRPGPLKQQNKAHKGGRHRGRGSAQRDGKGRLALKTLSKKVRKELSRVDQRHRASQL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA1 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RKQKKEAVLAEKRQLGGKDGPPHQVLVVPLHSRISLPEAMQLLQDRDTGTVHLNELGNTQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA1 NFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NFMLLCPRLKHRWFFTSARPGDLHVVLDMAKVADTILFLLDPLEGWDSTGDYCLSCLFAQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA1 GLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GLPTYTLAVQGISGLPLKKQIDTRKKLSKAVEKRFPHDKLLLLDTQQEAGMLLRQLANQK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA1 QQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QQHLAFRDRRAYLFAHAVDFVPSEENNLVGTLKISGYVRGQTLNVNRLLHIVGYGDFQMK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA1 QIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QIDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA1 PDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PDPMEGEQTWPTEEELSEAKDFLKESSKVVKKVPKGTSSYQAEWILDGGSQSGGEGDEYE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA1 YDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YDDMEHEDFMEEESQDESSEEEEEYETMTIGESVHDDLYDKKVDEEAEAKMLEKYKQERL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA1 EEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EEMFPDEVDTPRDVAARIRFQKYRGLKSFRTSPWDPKENLPQDYARIFQFQNFTNTRKSI
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA1 FKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FKEVEEKEVEGAEVGWYVTLHVSEVPVSVVECFRQGTPLIAFSLLPHEQKMSVLNMVVRR
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA1 DPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DPGNTEPVKAKEELIFHCGFRRFRASPLFSQHTAADKHKLQRFLTADMALVATVYAPITF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA1 PPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PPASVLLFKQKSNGMHSLIATGHLMSVDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNR
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA1 EDVLWFKPVELRTKWGWRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYD
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDVLWFKPVELRTKWGRRGHIKEPLGTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYD
730 740 750 760 770 780
790 800
pF1KA1 PYVPEPVPWLKSEISSTVPQGGME
::::::::::::::::::::::::
CCDS32 PYVPEPVPWLKSEISSTVPQGGME
790 800
>>CCDS7199.1 BMS1 gene_id:9790|Hs108|chr10 (1282 aa)
initn: 489 init1: 165 opt: 397 Z-score: 366.8 bits: 79.4 E(32554): 4.2e-14
Smith-Waterman score: 399; 22.8% identity (54.5% similar) in 486 aa overlap (332-781:636-1112)
310 320 330 340 350 360
pF1KA1 IDAPGDPFPLNPRGIKPQKDPDMAMEICATDAVDDMEEGLKVLMKADPGRQESLQAEVIP
: ..:.:. :: . . ..:. ...
CCDS71 DSENEEAIRKKLSKPSQVSSGQKLGPQNFIDETSDIENLLK---EEEDYKEENNDSK---
610 620 630 640 650
370 380 390 400 410
pF1KA1 DPMEGEQTWPTEEELSEAKDFLKESSKV--VKKVPKGTSSYQAEWILD------GGSQSG
: : . . :. ::.... . ..:. :: . . : : ::
CCDS71 -ETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTVTEDNEEEDDDTLEELGGLFRV
660 670 680 690 700 710
420 430 440 450
pF1KA1 GEGD---EYEYDDMEHEDFMEEESQDESSEE--------------EEEYETMTI---GES
.. : ... :... :. : .: . :: :.. .. . :
CCDS71 NQPDRECKHKADSLDCSRFLVEAPHDWDLEEVMNSIRDCFVTGKWEDDKDAAKVLAEDEE
720 730 740 750 760 770
460 470 480 490 500 510
pF1KA1 VHDDLYDKKVDEEAEAKMLEKYKQERLEEMFPDEVDTPRDVAARIR-FQKYRGLKSFRTS
.. :. : .. . ..: . ..: .:. .:.: .. .:. . ..: : :: . .
CCDS71 LYGDFEDLETGDVHKGKSGPNTQNEDIEKEVKEEIDPDEEESAKKKHLDKKRKLKEMFDA
780 790 800 810 820 830
520 530 540 550 560
pF1KA1 PWDPKENLPQDYARIFQFQNFTNTRKSIFKEVEEK---EVEGAEVGWYVTLHVSEVPVSV
.: :. : . ..:. .. .. :.. ... . :: . : :: ... .::
CCDS71 EYDEGESTYFDDLKG-EMQKQAQLNRAEFEDQDDEARVQYEGFRPGMYVRIEIENVPCEF
840 850 860 870 880 890
570 580 590 600 610 620
pF1KA1 VECFRQGTPLIAFSLLPHEQKMSVLNMVVRRDPGNTEPVKAKEELIFHCGFRRFRASPLF
:. : :.: .: : ... ..: ... . .:... .:: :.:::.. ::.
CCDS71 VQNFDPHYPIILGGLGNSEGNVGYVQMRLKKHRWYKKILKSRDPIIFSVGWRRFQTIPLY
900 910 920 930 940 950
630 640 650 660 670 680
pF1KA1 SQHTAADKHKLQRFLTADMALVATVYAPITFPPASVLLFKQKSNGMHS---LIATGHLMS
. ...: .. : :. ..::: : .. .: :. .:. . ::: ...
CCDS71 YIEDHNGRQRLLKYTPQHMHCGAAFWGPIT-PQGTGFLAIQSVSGIMPDFRIAATGVVLD
960 970 980 990 1000 1010
690 700 710 720 730 740
pF1KA1 VDPDRMVIKRVVLSGHPFKIFTKMAVVRYMFFNREDVLWFKPVELRTKWGWRGHIKEPL-
.: . ..:.. :.: :.::: . . .. :: . .: :. . .:: : ::.::. :
CCDS71 LDKSIKIVKKLKLTGFPYKIFKNTSFIKGMFNSALEVAKFEGAVIRTVSGIRGQIKKALR
1020 1030 1040 1050 1060 1070
750 760 770 780 790 800
pF1KA1 GTHGHMKCSFDGKLKSQDTVLMNLYKRVFPKWTYDPYVPEPVPWLKSEISSTVPQGGME
. .: .. ::. :: .: :.: . : :.:
CCDS71 APEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSLLKPVGEKDTWSGMRTTGQLR
1080 1090 1100 1110 1120 1130
CCDS71 LAHGVRLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKAGKVPKDRRRP
1140 1150 1160 1170 1180 1190
804 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:32:11 2016 done: Fri Nov 4 01:32:12 2016
Total Scan time: 3.920 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]