FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0494, 495 aa
  1>>>pF1KA0494 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6563+/-0.000922; mu= 13.3475+/- 0.056
 mean_var=123.7201+/-24.300, 0's: 0 Z-trim(109.3): 26  B-trim: 82 in 2/50
 Lambda= 0.115307
 statistics sampled from 10810 (10824) to 10810 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.692), E-opt: 0.2 (0.332), width:  16
 Scan time:  3.320

The best scores are:                                      opt bits E(32554)
CCDS30706.1 EFCAB14 gene_id:9813|Hs108|chr1        ( 495) 3153 535.7 4.2e-152


>>CCDS30706.1 EFCAB14 gene_id:9813|Hs108|chr1             (495 aa)
 initn: 3153 init1: 3153 opt: 3153  Z-score: 2844.1  bits: 535.7 E(32554): 4.2e-152
Smith-Waterman score: 3153; 100.0% identity (100.0% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KA0 MKKRKELNALIGLAGDSRRKKPKKGPSSHRLLRTEPPDSDSESSSEEEEEFGVVGNRSRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MKKRKELNALIGLAGDSRRKKPKKGPSSHRLLRTEPPDSDSESSSEEEEEFGVVGNRSRF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 AKGDYLRCCKICYPLCGFVILAACVVACVGLVWMQVALKEDLDALKEKFRTMESNQKSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AKGDYLRCCKICYPLCGFVILAACVVACVGLVWMQVALKEDLDALKEKFRTMESNQKSSF
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 QEIPKLNEELLSKQKQLEKIESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVKSAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 QEIPKLNEELLSKQKQLEKIESGEMGLNKVWINITEMNKQISLLTSAVNHLKANVKSAAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 LISLPTTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELLQSDMNQHFLKETPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LISLPTTVEGLQKSVASIGNTLNSVHLAVEALQKTVDEHKKTMELLQSDMNQHFLKETPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 SNQIIPSPSATSELDNKTHSENLKQDILYLHNSLEEVNSALVGYQRQNDLKLEGMNETVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 SNQIIPSPSATSELDNKTHSENLKQDILYLHNSLEEVNSALVGYQRQNDLKLEGMNETVS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 NLTQRVNLIESDVVAMSKVEKKANLSFSMMGDRSATLKRQSLDQVTNRTDTVKIQSIKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NLTQRVNLIESDVVAMSKVEKKANLSFSMMGDRSATLKRQSLDQVTNRTDTVKIQSIKKE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 DSSNSQVSKLREKLQLISALTNKPESNRPPETADEEQVESFTSKPSALPKFSQFLGDPVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 DSSNSQVSKLREKLQLISALTNKPESNRPPETADEEQVESFTSKPSALPKFSQFLGDPVE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 KAAQLRPISLPGVSSTEDLQDLFRKTGQDVDGKLTYQEIWTSLGSAMPEPESLRAFDSDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KAAQLRPISLPGVSSTEDLQDLFRKTGQDVDGKLTYQEIWTSLGSAMPEPESLRAFDSDG
              430       440       450       460       470       480

              490     
pF1KA0 DGRYSFLELRVALGI
       :::::::::::::::
CCDS30 DGRYSFLELRVALGI
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:42:04 2016 done: Sat Nov  5 06:42:05 2016
 Total Scan time:  3.320 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]