Result of FASTA (ccds) for
pF1KA0460
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0460, 1424 aa
1>>>pF1KA0460 1424 - 1424 aa - 1424 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 12.8773+/-0.00119; mu= -8.0520+/- 0.072
mean_var=546.8863+/-113.550, 0's: 0 Z-trim(115.1): 58 B-trim: 176 in 1/53
Lambda= 0.054844
statistics sampled from 15609 (15643) to 15609 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.753), E-opt: 0.2 (0.481), width: 16
Scan time: 7.190
The best scores are: opt bits E(32554)
CCDS44216.1 RPRD2 gene_id:23248|Hs108|chr1 (1461) 9503 768.0 0
CCDS72907.1 RPRD2 gene_id:23248|Hs108|chr1 (1435) 8620 698.1 4.7e-200
>>CCDS44216.1 RPRD2 gene_id:23248|Hs108|chr1 (1461 aa)
initn: 9503 init1: 9503 opt: 9503 Z-score: 4082.6 bits: 768.0 E(32554): 0
Smith-Waterman score: 9503; 100.0% identity (100.0% similar) in 1424 aa overlap (1-1424:38-1461)
10 20 30
pF1KA0 MESIQGLSSWCIENKKHHSTIVYHWMKWLR
::::::::::::::::::::::::::::::
CCDS44 GSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
130 140 150 160 170 180
160 170 180 190 200 210
pF1KA0 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KA0 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
250 260 270 280 290 300
280 290 300 310 320 330
pF1KA0 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
310 320 330 340 350 360
340 350 360 370 380 390
pF1KA0 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
370 380 390 400 410 420
400 410 420 430 440 450
pF1KA0 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
430 440 450 460 470 480
460 470 480 490 500 510
pF1KA0 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
490 500 510 520 530 540
520 530 540 550 560 570
pF1KA0 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
550 560 570 580 590 600
580 590 600 610 620 630
pF1KA0 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
610 620 630 640 650 660
640 650 660 670 680 690
pF1KA0 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
670 680 690 700 710 720
700 710 720 730 740 750
pF1KA0 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
730 740 750 760 770 780
760 770 780 790 800 810
pF1KA0 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
790 800 810 820 830 840
820 830 840 850 860 870
pF1KA0 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
850 860 870 880 890 900
880 890 900 910 920 930
pF1KA0 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
910 920 930 940 950 960
940 950 960 970 980 990
pF1KA0 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
970 980 990 1000 1010 1020
1000 1010 1020 1030 1040 1050
pF1KA0 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
1030 1040 1050 1060 1070 1080
1060 1070 1080 1090 1100 1110
pF1KA0 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
1090 1100 1110 1120 1130 1140
1120 1130 1140 1150 1160 1170
pF1KA0 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
1150 1160 1170 1180 1190 1200
1180 1190 1200 1210 1220 1230
pF1KA0 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
1210 1220 1230 1240 1250 1260
1240 1250 1260 1270 1280 1290
pF1KA0 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
1270 1280 1290 1300 1310 1320
1300 1310 1320 1330 1340 1350
pF1KA0 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
1330 1340 1350 1360 1370 1380
1360 1370 1380 1390 1400 1410
pF1KA0 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
1390 1400 1410 1420 1430 1440
1420
pF1KA0 PFFAPKRPFFPPRY
::::::::::::::
CCDS44 PFFAPKRPFFPPRY
1450 1460
>>CCDS72907.1 RPRD2 gene_id:23248|Hs108|chr1 (1435 aa)
initn: 8604 init1: 8604 opt: 8620 Z-score: 3705.2 bits: 698.1 E(32554): 4.7e-200
Smith-Waterman score: 9269; 98.2% identity (98.2% similar) in 1424 aa overlap (1-1424:38-1435)
10 20 30
pF1KA0 MESIQGLSSWCIENKKHHSTIVYHWMKWLR
::::::::::::::::::::::::::::::
CCDS72 GSSKASSSSASSAGALESSLDRKFQSVTNTMESIQGLSSWCIENKKHHSTIVYHWMKWLR
10 20 30 40 50 60
40 50 60 70 80 90
pF1KA0 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 RSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVKDPSVSKSVERIFKIW
70 80 90 100 110 120
100 110 120 130 140 150
pF1KA0 EDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNKQWKKSQTSTNPKAALKSKIVAE
:::::::::::::::::: ::::::::::::::::
CCDS72 EDRNVYPEEMIVALREAL--------------------------TSTNPKAALKSKIVAE
130 140 150 160
160 170 180 190 200 210
pF1KA0 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 FRSQALIEELLLYKRSEDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEAS
170 180 190 200 210 220
220 230 240 250 260 270
pF1KA0 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLD
230 240 250 260 270 280
280 290 300 310 320 330
pF1KA0 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QLKSTLPDPEESPVPSPSMDAPSPTGSESPFQGMGGEESQSPTMESEKSATPEPVTDNRD
290 300 310 320 330 340
340 350 360 370 380 390
pF1KA0 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 VEDMELSDVEDDGSKIIVEDRKEKPAEKSAVSTSVPTKPTENISKASSCTPVPVTMTATP
350 360 370 380 390 400
400 410 420 430 440 450
pF1KA0 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PLPKPVNTSLSPSPALALPNLANVDLAKISSILSSLTSVMKNTGVSPASRPSPGTPTSPS
410 420 430 440 450 460
460 470 480 490 500 510
pF1KA0 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLTSGLKTPAPATTTSHNPLANILSKVEITPESILSALSKTQTQSAPALQGLSSLLQSVT
470 480 490 500 510 520
520 530 540 550 560 570
pF1KA0 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GNPVPASEAASQSTSASPANTTVSTIKGRNLPSSAQPFIPKSFNYSPNSSTSEVSSTSAS
530 540 550 560 570 580
580 590 600 610 620 630
pF1KA0 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 KASIGQSPGLPSTTFKLPSNSLGFTATHNTSPAAPPTEVTICQSSEVSKPKLESESTSPS
590 600 610 620 630 640
640 650 660 670 680 690
pF1KA0 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LEMKIHNFLKGNPGFSGLNLNIPILSSLGSSAPSESHPSDFQRGPTSTSIDNIDGTPVRD
650 660 670 680 690 700
700 710 720 730 740 750
pF1KA0 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 ERSGTPTQDEMMDKPTSSSVDTMSLLSKIISPGSSTPSSTRSPPPGRDESYPRELSNSVS
710 720 730 740 750 760
760 770 780 790 800 810
pF1KA0 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 TYRPFGLGSESPYKQPSDGMERPSSLMDSSQEKFYPDTSFQEDEDYRDFEYSGPPPSAMM
770 780 790 800 810 820
820 830 840 850 860 870
pF1KA0 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 NLEKKPAKSILKSSKLSDTTEYQPILSSYSHRAQEFGVKSAFPPSVRALLDSSENCDRLS
830 840 850 860 870 880
880 890 900 910 920 930
pF1KA0 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 SSPGLFGAFSVRGNEPGSDRSPSPSKNDSFFTPDSNHNSLSQSTTGHLSLPQKQYPDSPH
890 900 910 920 930 940
940 950 960 970 980 990
pF1KA0 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PVPHRSLFSPQNTLAAPTGHPPTSGVEKVLASTISTTSTIEFKNMLKNASRKPSDDKHFG
950 960 970 980 990 1000
1000 1010 1020 1030 1040 1050
pF1KA0 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QAPSKGTPSDGVSLSNLTQPSLTATDQQQQEEHYRIETRVSSSCLDLPDSTEEKGAPIET
1010 1020 1030 1040 1050 1060
1060 1070 1080 1090 1100 1110
pF1KA0 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LGYHSASNRRMSGEPIQTVESIRVPGKGNRGHGREASRVGWFDLSTSGSSFDNGPSSASE
1070 1080 1090 1100 1110 1120
1120 1130 1140 1150 1160 1170
pF1KA0 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 LASLGGGGSGGLTGFKTAPYKERAPQFQESVGSFRSNSFNSTFEHHLPPSPLEHGTPFQR
1130 1140 1150 1160 1170 1180
1180 1190 1200 1210 1220 1230
pF1KA0 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 EPVGPSSAPPVPPKDHGGIFSRDAPTHLPSVDLSNPFTKEAALAHAAPPPPPGEHSGIPF
1190 1200 1210 1220 1230 1240
1240 1250 1260 1270 1280 1290
pF1KA0 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 PTPPPPPPPGEHSSSGGSGVPFSTPPPPPPPVDHSGVVPFPAPPLAEHGVAGAVAVFPKD
1250 1260 1270 1280 1290 1300
1300 1310 1320 1330 1340 1350
pF1KA0 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 HSSLLQGTLAEHFGVLPGPRDHGGPTQRDLNGPGLSRVRESLTLPSHSLEHLGPPHGGGG
1310 1320 1330 1340 1350 1360
1360 1370 1380 1390 1400 1410
pF1KA0 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 GGGSNSSSGPPLGPSHRDTISRSGIILRSPRPDFRPREPFLSRDPFHSLKRPRPPFARGP
1370 1380 1390 1400 1410 1420
1420
pF1KA0 PFFAPKRPFFPPRY
::::::::::::::
CCDS72 PFFAPKRPFFPPRY
1430
1424 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:38:09 2016 done: Sat Nov 5 02:38:10 2016
Total Scan time: 7.190 Total Display time: 0.190
Function used was FASTA [36.3.4 Apr, 2011]