Result of FASTA (ccds) for
pF1KA0162
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KA0162, 1726 aa
1>>>pF1KA0162 1726 - 1726 aa - 1726 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.6724+/-0.0013; mu= 5.3298+/- 0.078
mean_var=260.7836+/-53.342, 0's: 0 Z-trim(109.0): 33 B-trim: 264 in 1/53
Lambda= 0.079421
statistics sampled from 10595 (10612) to 10595 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.653), E-opt: 0.2 (0.326), width: 16
Scan time: 3.970
The best scores are: opt bits E(32554)
CCDS32596.1 SUPT6H gene_id:6830|Hs108|chr17 (1726) 11614 1345.8 0
>>CCDS32596.1 SUPT6H gene_id:6830|Hs108|chr17 (1726 aa)
initn: 11614 init1: 11614 opt: 11614 Z-score: 7202.7 bits: 1345.8 E(32554): 0
Smith-Waterman score: 11614; 100.0% identity (100.0% similar) in 1726 aa overlap (1-1726:1-1726)
10 20 30 40 50 60
pF1KA0 MSDFVESEAEESEEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFIND
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSDFVESEAEESEEEYNDEGEVVPRVTKKFVEEEDDDEEEEEENLDDQDEQGNLKGFIND
10 20 30 40 50 60
70 80 90 100 110 120
pF1KA0 DDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DDDEDEGEEDEGSDSGDSEDDVGHKKRKRTSFDDRLEDDDFDLIEENLGVKVKRGQKYRR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KA0 VKKMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VKKMSDDEDDDEEEYGKEEHEKEAIAEEIFQDGEGEEGQEAMEAPMAPPEEEEEDDEESD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KA0 IDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDFDYDEFEKYNEYDEELEEEY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KA0 EYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EYEDDEAEGEIRVRPKKTTKKRVSRRSIFEMYEPSELESSHLTDQDNEIRATDLPERFQL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KA0 RSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RSIPVKGAEDDELEEEADWIYRNAFATPTISLQESCDYLDRGQPASSFSRKGPSTIQKIK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KA0 EALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EALGFMRNQHFEVPFIAFYRKEYVEPELHINDLWRVWQWDEKWTQLRIRKENLTRLFEKM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KA0 QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAYQYEQISADPDKPLADGIRALDTTDMERLKDVQSMDELKDVYNHFLLYYGRDIPKMQN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KA0 AAKASRKKLKRVREEGDEEGEGDEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AAKASRKKLKRVREEGDEEGEGDEAEDEEQRGPELKQASRRDMYTICQSAGLDGLAKKFG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KA0 LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LTPEQFGENLRDSYQRHETEQFPAEPLELAKDYVCSQFPTPEAVLEGARYMVALQIAREP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KA0 LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LVRQVLRQTFQERAKLNITPTKKGRKDVDEAHYAYSFKYLKNKPVKELRDDQFLKICLAE
610 620 630 640 650 660
670 680 690 700 710 720
pF1KA0 DEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DEGLLTTDISIDLKGVEGYGNDQTYFEEIKQFYYRDEFSHQVQEWNRQRTMAIERALQQF
670 680 690 700 710 720
730 740 750 760 770 780
pF1KA0 LYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LYVQMAKELKNKLLAEAKEYVIKACSRKLYNWLRVAPYRPDQQVEEDDDFMDENQGKGIR
730 740 750 760 770 780
790 800 810 820 830 840
pF1KA0 VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VLGIAFSSARDHPVFCALVNGEGEVTDFLRLPHFTKRRTAWREEEREKKAQDIETLKKFL
790 800 810 820 830 840
850 860 870 880 890 900
pF1KA0 LNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LNKKPHVVTVAGENRDAQMLIEDVKRIVHELDQGQQLSSIGVELVDNELAILYMNSKKSE
850 860 870 880 890 900
910 920 930 940 950 960
pF1KA0 AEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AEFRDYPPVLRQAVSLARRIQDPLIEFAQVCSSDEDILCLKFHPLQEHVVKEELLNALYC
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KA0 EFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EFINRVNEVGVDVNRAIAHPYSQALIQYVCGLGPRKGTHLLKILKQNNTRLESRTQLVTM
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KA0 CHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CHMGPKVFMNCAGFLKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESA
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KA0 EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITLYDIRAELSCRYKDLRTA
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KA0 YRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YRSPNTEEIFNMLTKETPETFYIGKLIICNVTGIAHRRPQGESYDQAIRNDETGLWQCPF
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KA0 CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CQQDNFPELSEVWNHFDSGSCPGQAIGVKTRLDNGVTGFIPTKFLSDKVVKRPEERVKVG
1210 1220 1230 1240 1250 1260
1270 1280 1290 1300 1310 1320
pF1KA0 MTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTVHCRIMKIDIEKFSADLTCRTSDLMDRNNEWKLPKDTYYDFDAEAADHKQEEDMKRKQ
1270 1280 1290 1300 1310 1320
1330 1340 1350 1360 1370 1380
pF1KA0 QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKGENHLTVTWKVSDGIYQH
1330 1340 1350 1360 1370 1380
1390 1400 1410 1420 1430 1440
pF1KA0 VDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 VDVREEGKENAFSLGATLWINSEEFEDLDEIVARYVQPMASFARDLLNHKYYQDCSGGDR
1390 1400 1410 1420 1430 1440
1450 1460 1470 1480 1490 1500
pF1KA0 KKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KKLEELLIKTKKEKPTFIPYFICACKELPGKFLLGYQPRGKPRIEYVTVTPEGFRYRGQI
1450 1460 1470 1480 1490 1500
1510 1520 1530 1540 1550 1560
pF1KA0 FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 FPTVNGLFRWFKDHYQDPVPGITPSSSSRTRTPASINATPANINLADLTRAVNALPQNMT
1510 1520 1530 1540 1550 1560
1570 1580 1590 1600 1610 1620
pF1KA0 SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SQMFSAIAAVTGQGQNPNATPAQWASSQYGYGGSGGGSSAYHVFPTPAQQPVATPLMTPS
1570 1580 1590 1600 1610 1620
1630 1640 1650 1660 1670 1680
pF1KA0 YSYTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YSYTTPSQPITTPQYHQLQASTTPQSAQAQPQPSSSSRQRQQQPKSNSHAAIDWGKMAEQ
1630 1640 1650 1660 1670 1680
1690 1700 1710 1720
pF1KA0 WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WLQEKEAERRKQKQRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR
1690 1700 1710 1720
1726 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 02:21:03 2016 done: Sat Nov 5 02:21:04 2016
Total Scan time: 3.970 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]