FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0160, 739 aa
  1>>>pF1KA0160 739 - 739 aa - 739 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5082+/-0.00102; mu= 12.1384+/- 0.062
 mean_var=209.4091+/-43.654, 0's: 0 Z-trim(110.5): 54  B-trim: 7 in 1/54
 Lambda= 0.088629
 statistics sampled from 11641 (11676) to 11641 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.691), E-opt: 0.2 (0.359), width:  16
 Scan time:  4.170

The best scores are:                                      opt bits E(32554)
CCDS11270.1 SUZ12 gene_id:23512|Hs108|chr17        ( 739) 4943 645.5 8.5e-185
CCDS82101.1 SUZ12 gene_id:23512|Hs108|chr17        ( 716) 3987 523.3 5.2e-148


>>CCDS11270.1 SUZ12 gene_id:23512|Hs108|chr17             (739 aa)
 initn: 4943 init1: 4943 opt: 4943  Z-score: 3431.1  bits: 645.5 E(32554): 8.5e-185
Smith-Waterman score: 4943; 100.0% identity (100.0% similar) in 739 aa overlap (1-739:1-739)

               10        20        30        40        50        60
pF1KA0 MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 AAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 RNSRTNIKRKTFKVDDMLSKVEKMKGEQESHSLSAHLQLTFTGFFHKNDKPSPNSENEQN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RNSRTNIKRKTFKVDDMLSKVEKMKGEQESHSLSAHLQLTFTGFFHKNDKPSPNSENEQN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 SVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 NSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVNEELPARRKRNREDGEKTFVAQMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVNEELPARRKRNREDGEKTFVAQMT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 VFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 WTGETNDKSTAPIAKPLATRNSESLHQENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WTGETNDKSTAPIAKPLATRNSESLHQENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 ENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 HPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 HPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASM
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 SEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQI
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 EEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 VSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEEITEEQNGTANGFSEINSKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEEITEEQNGTANGFSEINSKEK
              670       680       690       700       710       720

              730         
pF1KA0 ALETDSVSGVSKQSKKQKL
       :::::::::::::::::::
CCDS11 ALETDSVSGVSKQSKKQKL
              730         

>>CCDS82101.1 SUZ12 gene_id:23512|Hs108|chr17             (716 aa)
 initn: 4781 init1: 3948 opt: 3987  Z-score: 2770.7  bits: 523.3 E(32554): 5.2e-148
Smith-Waterman score: 4739; 96.9% identity (96.9% similar) in 739 aa overlap (1-739:1-716)

               10        20        30        40        50        60
pF1KA0 MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MAPQKHGGGGGGGSGPSAGSGGGGFGGSAAVAAATASGGKSGGGSCGGGGSYSASSSSSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 AAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AAAAGAAVLPVKKPKMEHVQADHELFLQAFEKPTQIYRFLRTRNLIAPIFLHRTLTYMSH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 RNSRTNIKRKTFKVDDMLSKVEKMKGEQESHSLSAHLQLTFTGFFHKNDKPSPNSENEQN
       ::::::::                       :::::::::::::::::::::::::::::
CCDS82 RNSRTNIK-----------------------SLSAHLQLTFTGFFHKNDKPSPNSENEQN
                                     130       140       150       

              190       200       210       220       230       240
pF1KA0 SVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPS
       160       170       180       190       200       210       

              250       260       270       280       290       300
pF1KA0 NSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVNEELPARRKRNREDGEKTFVAQMT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 NSHMVKSYSLLFRVTRPGRREFNGMINGETNENIDVNEELPARRKRNREDGEKTFVAQMT
       220       230       240       250       260       270       

              310       320       330       340       350       360
pF1KA0 VFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLR
       280       290       300       310       320       330       

              370       380       390       400       410       420
pF1KA0 WTGETNDKSTAPIAKPLATRNSESLHQENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 WTGETNDKSTAPIAKPLATRNSESLHQENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPN
       340       350       360       370       380       390       

              430       440       450       460       470       480
pF1KA0 ENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVY
       400       410       420       430       440       450       

              490       500       510       520       530       540
pF1KA0 HPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 HPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASM
       460       470       480       490       500       510       

              550       560       570       580       590       600
pF1KA0 SEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRPQEMEVDSEDEKDPEWLREKTITQI
       520       530       540       550       560       570       

              610       620       630       640       650       660
pF1KA0 EEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHL
       580       590       600       610       620       630       

              670       680       690       700       710       720
pF1KA0 VSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEEITEEQNGTANGFSEINSKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEEITEEQNGTANGFSEINSKEK
       640       650       660       670       680       690       

              730         
pF1KA0 ALETDSVSGVSKQSKKQKL
       :::::::::::::::::::
CCDS82 ALETDSVSGVSKQSKKQKL
       700       710      




739 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 19:29:09 2016 done: Thu Nov  3 19:29:10 2016
 Total Scan time:  4.170 Total Display time:  0.040

Function used was FASTA [36.3.4 Apr, 2011]