GENSCAN 1.0	Date run:  8-Nov-116	Time: 08:26:43

Sequence gi568815597r:350743_551678 : 200936 bp : 43.01% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 1.01 Intr +   3289   3376   88  0  1   67   63    82 0.743   3.14
 1.02 Intr +   5558   5696  139  0  1   67  110    82 0.896   7.82
 1.03 Term +   6066   6117   52  0  1  111   36    34 0.591  -2.60
 1.04 PlyA +   6905   6910    6                               1.05

 2.06 PlyA -   7137   7132    6                              -0.45
 2.05 Term -   7441   7325  117  1  0  107   43    62 0.091   2.14
 2.04 Intr -  22581  22402  180  0  0   83  106    45 0.025   5.86
 2.03 Intr -  26616  26467  150  0  0  110   39   139 0.725  11.56
 2.02 Intr -  29128  29027  102  1  0  129   81    79 0.989  11.67
 2.01 Init -  48358  48299   60  1  0   59  105    14 0.073   1.45
 2.00 Prom -  57059  57020   40                              -4.46

 3.00 Prom +  59863  59902   40                              -2.96
 3.01 Init +  62242  62352  111  0  0   80   75    57 0.805   3.81
 3.02 Term +  64373  64534  162  1  0   65   33   158 0.830   5.94
 3.03 PlyA +  64823  64828    6                               1.05

 4.00 Prom +  68792  68831   40                              -4.16
 4.01 Sngl +  91858  92199  342  0  0   73   38   183 0.684   7.83
 4.02 PlyA +  92426  92431    6                               1.05

 5.02 PlyA -  96166  96161    6                               1.05
 5.01 Sngl - 100696  99998  699  1  0   76   36   310 0.766  20.81
 5.00 Prom - 119011 118972   40                              -1.36

 6.00 Prom + 130747 130786   40                              -4.16
 6.01 Init + 136403 136582  180  1  0   66   75   107 0.848   6.38
 6.02 Intr + 136833 137090  258  2  0  -10   72   412 0.425  27.46
 6.03 Intr + 137564 137626   63  1  0   56   16   117 0.473   0.21
 6.04 Intr + 138380 138561  182  1  2   93   76    94 0.714   7.37
 6.05 Term + 139999 140074   76  1  1  102   41    74 0.650   1.41
 6.06 PlyA + 140092 140097    6                               1.05

 7.07 PlyA - 140203 140198    6                              -3.94
 7.06 Term - 143298 143151  148  2  1   79   54    94 0.545   2.47
 7.05 Intr - 147714 147657   58  1  1   88  101    66 0.598   5.84
 7.04 Intr - 173796 173738   59  2  2   81   98    29 0.306   1.73
 7.03 Intr - 177118 177097   22  2  1   99   98     6 0.225  -0.70
 7.02 Intr - 180541 180410  132  2  0  115   94   -24 0.525   1.52
 7.01 Intr - 181689 181606   84  1  0   31  119    93 0.712   6.49

Suboptimal exons with probability > 0.800

Exnum Type S .Begin ...End .Len Fr Ph B/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

S.001 Sngl + 108424 108612  189  0  0   72   42   161 0.828   5.01


Predicted peptide sequence(s):

Predicted coding sequence(s):


>gi568815597r:350743_551678|GENSCAN_predicted_peptide_1|92_aa
VSLKDNETLVFTVDMPHYQVLQSHGDPSSVNLLLPGGRQSLSPSVSANQLTCCFLEEDSH
SVSANPVDRRHAGLLSSFTPGPQEINVMLTSL

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_1|279_bp
gtcagtcttaaggacaatgaaactctggtcttcactgtggacatgccacactaccaggtg
ctccaaagccatggtgacccgtcctcggttaacctgctgcttcctggagggagacagtcc
ctcagtccctctgtctctgccaaccagttaacctgctgcttcctggaggaagacagtcac
tctgtctctgccaacccagttgaccgcagacatgcaggtctgctcagctccttcacccct
gggcctcaggaaatcaatgtcatgctgacatcactctag

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_2|202_aa
MDDHFKRSRLSQEESSKSDLLCCPLPHTRDGAENVLCEPVTSGPVDVVVLAYSLRKSRSW
RHLETGSSPSRPRVRGSLLVRAERRVGFRVEAPVPLKRVWVASRDWTSLWEQQDQQEEQE
QHQESGPGGPDGYRTGTDPHRNPRVCSTAGHACAERVGRKELTWTKPMHNSYVLMVVLRF
PKFLPTKLCTRSQDLLKLRHRR

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_2|609_bp
atggatgaccatttcaaacgatccaggctaagccaggaggagagctcaaagtctgatctg
ctctgctgccccctgccccatacacgtgatggagcagaaaacgtgctgtgtgaacctgtg
acttcagggcctgttgacgtggtcgtgcttgcatactctctgaggaaatcccgcagctgg
cggcacctggagaccggctcctcgccgagccgaccgcgcgtgcgcggctccctcctcgtc
cgtgctgagcgccgcgtggggttccgcgtggaggcgcctgtgccgctgaagcgtgtttgg
gttgcttccagggactggacctcactgtgggaacaacaagatcaacaagaggagcaagaa
caacatcaagagtcagggcccgggggtcctgacgggtacaggacgggtacagacccacac
aggaatcccagagtgtgttccacagcaggacacgcctgcgctgaaagagtgggcagaaag
gagctgacctggaccaaaccaatgcacaactcctacgtactgatggtggtcttacgtttc
cctaagtttctgccgactaaactgtgcacacgttctcaggacctcctgaagctgcgtcac
aggcgctga

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_3|90_aa
MDQAVHKGFTDSFTKLMPKLSGFIDKDLYLIDKGIYKTQTHLEVMFNMNTSQRRKFTHEK
YICRKPAGMSTIRKLRVFGIKKTQEDKYEA

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_3|273_bp
atggaccaagcagtccacaagggcttcacagacagttttactaaactcatgccaaaactt
tcaggttttatagataaagatctataccttatagataaaggtatctataagacccaaaca
cacttggaggtcatgttcaatatgaatacctcacagagaaggaaatttacgcacgagaag
tacatctgcagaaagccagctggcatgtcaaccattcgaaaactcagggtgttcgggata
aagaagactcaggaagacaagtatgaagcataa

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_4|113_aa
MHKDQALIRSSGRKISETEYQLNEINQEDKIREKRMKRNEQSLQEIWDYVKRPNLRLIAV
PESDGENGTKLENTLQDIIQENFPNLARQANIQIQKYGEHHKDTPQEKQPQDT

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_4|342_bp
atgcacaaggatcaagcactgattcgatcaagcggaagaaagatatcagagactgaatat
caacttaatgaaataaatcaagaagacaagattagagaaaaaagaatgaaaagaaatgaa
caaagcctccaagaaatatgggactatgtgaaacgaccaaatctacgtttgattgctgta
cctgaaagtgatggggagaatggaaccaagttagaaaacactcttcaggatattatccag
gagaacttccctaacctagcaaggcaggccaatattcaaattcagaaatacggagaacat
cacaaagacactcctcaagaaaagcaaccccaagacacatag

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_5|232_aa
MIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRM
CLSFLAVAWTLGVSHSLFQLAFLVNLAFCGPNVLDSFYCDLPRLLRLACTDTYRLQFMVT
VNSGFICVGTFFILLISYVFILFTVWKHSSGGSSKALSTLSAHSTVVLLFFGPPMFVYTR
PHPNSQMDKFLAIFDAVLTPFLNPVVYTFRNKEMKAAIKRVCKQLVIYKRIS

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_5|699_bp
atgatttatgacctgttcagaaagcgcaaagtcatctcctttggaggctgcatcgctcaa
atcttcttcatccacgtcgttggtggtgtggagatggtgctgctcatagccatggccttt
gacagatatgtggccctatgtaagcccctccactatctgaccattatgagcccaagaatg
tgcctttcatttctggctgttgcctggacccttggtgtcagtcactccctgttccaactg
gcatttcttgttaatttagccttctgtggccctaatgtgttggacagcttctactgtgac
cttcctcggcttctcagactagcctgtaccgacacctacagattgcagttcatggtcact
gttaacagtgggtttatctgtgtgggtactttcttcatacttctaatctcctacgtcttc
atcctgtttactgtttggaaacattcctcaggtggttcatccaaggccctttccactctt
tcagctcacagcacagtggtccttttgttctttggtccacccatgtttgtgtatacacgg
ccacaccctaattcacagatggacaagtttctggctatttttgatgcagttctcactcct
tttctgaatccagttgtctatacattcaggaataaggagatgaaggcagcaataaagaga
gtatgcaaacagctagtgatttacaagaggatctcataa

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_6|252_aa
MFVWRNVEGHSAAVFSWYSIPFLTPPCSHTRPSNLPVTQWPPTRENNLPSWQPLLMSVHQ
AQSLSALRKEQDSSSEKDGRSPNKSDKDHIRWPMSGAHDLQQAAPGPGGAHQGHPNQDNR
TVSQMLSERWYTLGPNEMQKYNLAFQHMASEVIASDEEHTVIHEEEGVEKPRTGSGNRRP
RRRCPLHCTYPGPVPALIMQLFQAHCFFLSTRPQPPSRPTMHTSSPPRTEHVDRGRYFSL
CQKVAMTVIKPV

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_6|759_bp
atgttcgtgtggaggaatgtggaaggtcactctgcggccgtgttctcctggtactccatc
cccttcctgacccctccctgcagccacacgaggcccagcaacctgccagtcactcagtgg
cctccaaccagagaaaacaacctgccaagttggcagccgttgctcatgagcgtccaccag
gcccagtccctcagtgccctgcgcaaggaacaggactcatcttctgagaaggatggacgc
agccccaacaaatcagacaaggaccacatccggtggcccatgagtggcgctcatgatctt
cagcaggcggcaccaggccctggcggggcgcaccagggtcaccccaaccaggataaccgg
accgtcagccagatgctgagcgagcggtggtacaccctggggcccaatgagatgcagaaa
tacaacctggccttccagcacatggccagcgaggtcatagcgagtgacgaagagcacacg
gtcatccatgaggaggagggggtggagaagccgaggacaggctcagggaaccggagaccg
agaaggcgctgtcctcttcactgcacgtaccctggaccagtgccggccctgatcatgcag
ctcttccaggcccactgcttcttcctgtccactaggccacagccgccctccaggcccact
atgcacacatcttcccctccaagaacagaacacgttgatcgtgggcgatatttttcattg
tgccaaaaagttgccatgaccgtcattaaacctgtttaa

>gi568815597r:350743_551678|GENSCAN_predicted_peptide_7|167_aa
XTKTNEPPQPPVPEPANAGERKMREFNSGPHNPVEETKLICLCPSGHASCQVHLWTGAML
LGFQSWRELPGSGLKARILQHELMNSTGEDLQLDKSTLSGGNIQLRENKLNTPTDSTLWH
NCCLTTAFFGPVPVQLMAANVGPKLPQVKLSRPTFCFPVASTGPALT

>gi568815597r:350743_551678|GENSCAN_predicted_CDS_7|504_bp
nagacaaagaccaacgagccaccacagccaccagtcccagaacctgccaatgctggggaa
cggaaaatgagggagttcaactctggccctcacaatccagtggaggagacgaaactcatc
tgcctctgtccctctgggcacgcctcatgccaggtgcatctgtggacaggggccatgctc
ctgggcttccaaagttggagagagctgccaggctcaggtctgaaggccagaattctacaa
catgaacttatgaattcaacaggtgaagatttacaacttgataaatcaactttgtcaggt
gggaacatccagttgcgggaaaacaagcttaacacgcccactgattctacattatggcac
aactgctgcctcacaacagccttttttggcccagttcctgtccagctcatggcggccaat
gtaggcccaaaacttcctcaagtcaaactctccaggcccaccttctgcttcccggtggca
tcaacaggcccagctttgacttga